Publications (PURE)

Publications

Recent publications


77  (of 77 published available) for Centre for Research into Ecological & Environmental Modelling with keyword Temporal clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2018 (5)
Marine Policy
vol.91 pp.113-121
(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (24/7)
Global Ecology and Biogeography
vol.27 pp.760-786
(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover

Journal of Fish Biology
vol.Early View 
(Article)

Journal of the Marine Biological Association of the United Kingdom
vol.First View 
(Article)
2018 (20/2)
Proceedings of the National Academy of Sciences of the United States of America
vol.115 pp.1843-1847
(Article)
Divergent biodiversity change within ecosystems
Anne Magurran, Amy Elizabeth Deacon, Faye Helen Moyes, Hideyasu Shimadzu, Maria Dornelas, Dawn Phillip, Indar Ramnarine 
Keywords: Biodiversity change, Tropical ecology, Freshwater, Temporal turnover, Community-level regulation
2018 (1/4)
Current Zoology
vol.64 pp.213-221
(Article)
2018 (10/1)
Proceedings of the Royal Society B: Biological Sciences
vol.285 
(Article)
2018 (25/7)
Proceedings of the Royal Society B: Biological Sciences
vol.285 
(Article)
2018 (1)
Oikos
vol.127 pp.134-146
(Article)
2017 (4)
Ecosphere
vol.8 
(Article)
2017 (12)
Methods in Ecology and Evolution
vol.8 pp.1690-1702
(Article)
2017 (26/7)
Science Advances
vol.3 
(Article)
Community-level regulation of temporal trends in biodiversity
Nicholas Gotelli, Hideyasu Shimadzu, Maria Dornelas, Brian McGill, Faye Helen Moyes, Anne Magurran 
2017 (6)
Journal of Applied Ecology
vol.54 pp.894-902
(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (7)
Deep Sea Research Part II: Topical Studies in Oceanography
vol.141 pp.8-19
(Article)
Distribution, abundance and habitat use of deep diving cetaceans in the North-East Atlantic
Emer Rogan, Ana Cañadas, Kelly Macleod, M. Begoña Santos, Bjarni Mikkelsen, Ainhize Uriarte, Olivier Van Canneyt, José Antonio Vázquez, Philip Steven Hammond 
Keywords: Design-based abundance, Model-based abundance, Beaked whales, Sperm whales, Pilot whales, Distribution, Deep divers, Habitat models
2017 (2)
Ecology
vol.98 pp.583-590
(Article)
Estimates of local biodiversity change over time stand up to scrutiny
Mark Vellend, Maria Dornelas, Lander Baeten, Robin Beauséjour, Carissa D. Brown, Pieter De Frenne, Sarah C. Elmendorf, Nicholas J Gotelli, Faye Helen Moyes, Isla H. Myers-Smith, Anne Magurran, Brian J. McGill, Hideyasu Shimadzu,  
Keywords: Biodiversity, Meta-analysis, Species richness, Temporal change
2017 (10)
Advances in Statistical Analysis
vol.101 pp.475-494
(Article)
2017 (12)
Animal Behaviour
vol.134 pp.167-175
(Article)
2017
vol.27 
(Conference contribution)
2017 (10)
Advances in Statistical Analysis
vol.101 pp.461-474
(Article)
2017 (16/1)
Agriculture, Ecosystems & Environment
vol.237 pp.280-289
(Article)
2017 (10)
Biological Conservation
vol.214 pp.23-34
(Article)
2017 (12)
Annals of Applied Statistics
vol.11 pp.2270-2297
(Article)
Point process models for spatio-temporal distance sampling data from a large-scale survey of blue whales
Joyce Yuan , F. E. Bachl, F. Lindgren, David Louis Borchers, Janine Baerbel Illian, Stephen Terrence Buckland, H Rue, T. Gerrodette 
2017 (2/2)
vol.602 
(Commissioned report)
Review of analytical approaches for identifying usage and foraging areas at sea for harbour seals
Esther Lane Jones, Sophie Caroline Smout, Debbie JF Russell, Eunice Pinn, Bernie J McConnell 
Keywords: JNCC

Scientific Reports
vol.7 
(Article)
Spatial distribution of citizen science casuistic observations for different taxonomic groups
Patrícia Tiago, Ana Ceia-Hasse, Tiago A. Marques, César Capinha, Henrique M. Pereira 
2017 (3)
Journal of the Acoustical Society of America
vol.141 pp.1962-1974
(Article)
Spatio-temporal variation in click production rates of beaked whales
Victoria E. Warren, Tiago A. Marques, Danielle Harris, Len Thomas, Peter Lloyd Tyack, Natacha Aguilar de Soto, Mark Johnson 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics
2017 (25/4)
Frontiers in Marine Science
vol.4 
(Article)
Underwater ambient noise in a baleen whale migratory habitat off the Azores
Miriam Romagosa, Irma Cascão, Nathan D. Merchant, Marc O. Lammers, Eva Giacomello, Tiago A. Marques, Mónica A. Silva 
Keywords: Underwater noise, Ship noise, Baleen whale, MSFD, Open ocean environment
2016 (12)
Journal of Applied Ecology
vol.53 pp.1642-1652
(Article)
Avoidance of wind farms by harbour seals is limited to pile driving activities
Debbie JF Russell, Gordon Drummond Hastie, David Thompson, Vincent Janik, Philip Steven Hammond, Lindesay Alexandra Sarah Scott-Hayward, Jason Matthiopoulos, Esther Lane Jones, Bernie J McConnell 
Keywords: Complex Region Spatial Smoother, Disturbance, Marine renewables, Marine spatial planning, Pinnipeds, Renewable energy, Spatially Adaptive Local Smoothing Algorithm, Spatially adaptive smoothing , Underwater noiseNERC
2016 (9)
Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology
vol.199 pp.50-57
(Article)
2016 (21/9)
Journal of Experimental Biology
vol.219 pp.2898-2907
(Article)
Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication
Patricia Arranz Alonso, Stacy Lynn De Ruiter, Alison Stimpert, Ari Friedlaender, Jeremy Goldbogen, Fleur Visser, John Calambokidis, Brandon Southall, Peter Lloyd Tyack 
Keywords: Biosonar, Pulsed sound, Buzz, Burst pulse, Jerk, Foraging behavior
2016 (12)
Behavioral Ecology and Sociobiology
vol.70 pp.2161–2174
(Article)
Dynamic habitat corridors for marine predators
Gordon Drummond Hastie, Debbie JF Russell, Steven Benjamins, Simon Moss, Ben Wilson, David Thompson 
Keywords: Foraging, Marine mammal, Oceanographic, Predator, Pinniped, DivingNERC
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016 (1)
Biometrical Journal
vol.58 pp.222-239
(Article)
2016 (6)
Fisheries Research
vol.178 pp.101-113
(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (22/2)
Journal of Applied Ecology
vol.53 pp.469-478
(Article)
Quantifying turnover in biodiversity of British breeding birds
Phil Harrison, Joyce Yuan , Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Andrew Elston, Mark Brewer, Alison Johnston, James Pierce-Higgins 
Keywords: Biodiversity, Breeding Bird Survey, Climate change, Farmland bird community, Species proportions, Turnover, Woodland bird community
2016 (24/6)
Scientific Reports
vol.6 
(Article)
Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning
A. Fais, Mark Johnson, M. Wilson, Natacha Aguilar de Soto, P. T. Madsen 
Keywords: General
2016 (6)
Journal of Agricultural, Biological and Environmental Statistics
vol.21 pp.363-381
(Article)
Using species proportions to quantify turnover in biodiversity
Joyce Yuan , Stephen Terrence Buckland, Phil Harrison, Sergey Foss, Alison Johnston 
Keywords: Biodiversity, Breeding bird survey, Species abundance distribution, Turnover measures
2015
Spatial Statistics

(Article)
2015 (18/3)
PLoS One
vol.10 
(Article)
Adapting to a warmer ocean – seasonal shift of baleen whale movements over three decades
Christian Ramp, Julian Delarue, Per J Palsbøll, Richard Sears, Philip Steven Hammond 
2015 (2)
Deep Sea Research Part II: Topical Studies in Oceanography
vol.112 pp.143-157
(Article)
2015 (11)
Oikos
vol.124 pp.1462-1472
(Article)
Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals
Debbie JF Russell, Brett Thomas McClintock, Jason Matthiopoulos, Paul Thompson, David Thompson, Philip Steven Hammond, Esther Lane Jones, Monique MacKenzie, Simon Moss, Bernie J McConnell 
Keywords: Area-restricted search, Bayesian , Energetic requirements, Energy budget, Hidden process models, Pinnipeds, Time budget
2015 (12)
Methods in Ecology and Evolution
vol.6 pp.1384-1394
(Article)
2015 (24/9)
Nature Communications
vol.6 
(Article)
Rapid biotic homogenization of marine fish assemblages
Anne Magurran, Maria Dornelas, Faye Helen Moyes, Nicholas J Gotelli, Brian McGill 
2015 (5)
Journal of Experimental Biology
vol.218 pp.1314-1324
(Article)
2015 (6)
Journal of Applied Ecology
vol.52 pp.631-640
(Article)
Sound exposure in harbour seals during the installation of an offshore wind farm
Gordon Drummond Hastie, Debbie JF Russell, Bernie J McConnell, Simon Moss, David Thompson, Vincent Janik 
Keywords: Wind farms, Hearing, Marine animals, Pile driving, Pinnipeds, Renewable energy, Underwater noiseNERC
2015 (10)
Behavioral Ecology and Sociobiology
vol.69 
(Article)
2014 (24/6)
Ecological Modelling
vol.282 pp.44-58
(Article)
2014 (18/4)
Science
vol.344 pp.296-299
(Article)
Assemblage time series reveal biodiversity change but not systematic loss
Maria Dornelas, Nicholas J Gotelli, Brian McGill, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran 
2014 (12)
Journal of Applied Ecology
vol.51 pp.1650-1660
(Article)
2014 (22/9)
Proceedings of the Royal Society B: Biological Sciences
vol.281 
(Article)
2014 (1)
Journal of Experimental Marine Biology and Ecology
vol.450 pp.30–39
(Article)
2014 (3)

(Commissioned report)
Seal at-sea distribution, movements and behaviour
Debbie JF Russell, Bernie J McConnell 
2014
Polarforschung
vol.83 pp.47-61
(Article)
Towards collective circum-antarctic passive acoustic monitoring
I. Van Opzeeland, F. Samaran, K.M. Stafford, K. Findlay, J. Gedamke, Danielle Harris, B.S. Miller 
2013
Journal of Animal Ecology
vol.82 pp.1300-1315
(Article)
Estimating resource acquisition and at-sea body condition of a marine predator
Robert Schilling Schick, Leslie New, Len Thomas, Daniel Costa, Mark Hindell, Clive McMahon, Patrick Robinson, Samantha Simmons, Michele Thums, John Harwood, James Clark 
Keywords: Resource acquisition, Bayesian, Elephant seals, Markov chain Monte Carlo, Satellite telemetry, State-space model, Body condition, Año Nuevo, Macquarie Island
2013 (25/3)
Marine Ecology Progress Series
vol.478 pp.273–285
(Article)
2013 (1)
Proceedings of the Royal Society B: Biological Sciences
vol.280 
(Article)
2013 (20/11)
Movement Ecology
vol.1 
(Article)
2013 (7/1)
Proceedings of the Royal Society B: Biological Sciences
vol.280 
(Article)
Quantifying temporal change in biodiversity
Maria Dornelas, Anne Magurran, Stephen Terrence Buckland, Anne Chao, Robin L Chazdon, Robert K Colwell, Tom Curtis, Kevin J Gaston, Nicolas J Gotelli, Matthew A Kosnik, Brian McGill, Jenny L McCune, Hélène Morlon, Peter J Mumby, Lise ØvreÃ¥s, Angelika Studeny, Mark Vellend 
Keywords: Biological diversity, Time, Legacy data, Traits, Global change, Conservation
2013
Biometrics
vol.69 pp.703-713
(Article)
Using hidden Markov models to deal with availability bias on line transect surveys
David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock 
Keywords: Availability bias, Detection hazard, Hidden Markov model, Line transect, Wildlife survey
2012 (12)
Journal of Agricultural, Biological and Environmental Statistics
vol.17 pp.601-622
(Article)
2012 (7/5)
Marine Ecology Progress Series
vol.453 pp.227-240
(Article)
2012 (12/9)
PLoS One
vol.7 
(Article)
2012 (23/2)
Marine Ecology Progress Series
vol.448 pp.155-170
(Article)
2012 (22/9)
Proceedings of the Royal Society B: Biological Sciences
vol.279 pp.3722-3726
(Article)
2012 (7)
Journal of Environmental Statistics
vol.3 
(Article)
2012 (16/11)
PLoS One
vol.7 
(Article)
2011 (2/9)
Ecosphere
vol.2 
(Article)