Publications (PURE)

Publications

Recent publications


60  (of 60 published available) for Centre for Research into Ecological & Environmental Modelling with keyword Monitoring clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.



(Article)
A balance of winners and losers in the Anthropocene
Maria Dornelas, Nicholas J. Gotelli, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran, Brian J. McGill 
Keywords: Anthropogenic, Biodiversity, Colonisation, Extinction, Population change
2019 (3)

(Review article)
A review of unmanned vehicles for the detection and monitoring of marine fauna
Ursula K. Verfuss, Ana Sofia Aniceto, Danielle Harris, Douglas Michael Gillespie, Sophie Fielding, Guillermo Jiménez, Phil Johnston, Rachael R. Sinclair, Agnar Sivertsen, Stian A. Solbø, Rune Storvold, Martin Biuw, Roy Wyatt 
Keywords: Unmanned vehicles, Marine animal monitoring, Underwater sound, Environmental impact assessment, Offshore industry
2018 (5)

(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (10)

(Article)
Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions
Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, Alejandro Acevedo-Gutiérrez 
Keywords: Spatial distribution, Passive acoustic monitoring, Population structure, Harbour porpoise, Marine protected areas, Biodiversity conservation
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (1)

(Review article)
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys
Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas 
Keywords: Marine mammals, Monitoring methods, Underwater noise, Seismic survey, Detection performance, Low visibility
2018 (12)

(Article)
Estimating effective detection area of static passive acoustic data loggers from playback experiments with cetacean vocalisations
Hanna K. Nuuttila, Katharina Brundiers, Michael Dähne, Jens C. Koblitz, Len Thomas, Winnie Courtene-Jones, Peter G. H. Evans, John R. Turner, Jim D. Bennell, Jan G. Hiddink 
Keywords: Abundance, C-POD, Density estimation, Detection function, Effective detection radius, Static passive acoustic monitoring
2018 (1)

(Review article)
Marine mammals and sonar
Catriona M Harris, Len Thomas, Erin Falcone, John Hildebrand, Dorian Houser, Petter Kvadsheim, Frans-Peter A. Lam, Patrick Miller, David J. Moretti, Andrew Read, Hans Slabbekoorn, Brandon L. Southall, Peter Lloyd Tyack, Douglas Wartzok, Vincent Janik 
Keywords: Sonar, Cetaceans, Human disturbance, Impact assessment, Anti-predator response, Anthropogenic noise, Behavioural response, Marine mammals, Dose response
2018 (2)

(Article)
Modelling the broadband propagation of marine mammal echolocation clicks for click-based population density estimates
Alexander von Benda-Beckmann, Len Thomas, Peter Lloyd Tyack, Michael Ainslie 
2018 (1)

(Article)
2017 (31/1)

(Article)
Assigning stranded bottlenose dolphins to source stocks using stable isotope ratios following the Deepwater Horizon oil spill
A A Hohn, Len Thomas, R. H. Carmichael, J. Litz, C. Clemons-Chevis, S. F. Shippee, C. Sinclair, S. Smith, T. R. Speakman, M. C. Tumlin, E. S. Zolman 
Keywords: Carbon, Gulf of Mexico, Nitrogen, Stock structure, Sulfur, Tursiops truncatusEcology, Nature and Landscape Conservation
2017 (6)

(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (7)

(Article)
Estimating cetacean density and abundance in the Central and Western Mediterranean Sea through aerial surveys
Simone Panigada, Giancarlo Lauriano, Greg Donovan, Nino Pierantonio, Ana Cañadas, José Antonio Vázquez, M Louise Burt 
2017 (7)

(Article)
Evaluating detectability of freshwater fish assemblages in tropical streams
Amy Elizabeth Deacon, Rajindra Mahabir, Devan Inderlall, Indar W. Ramnarine, Anne Magurran 
Keywords: Trinidad, Electrofishing, Alpha diversity, Detectability, Species richness, Sampling methods, Gear bias
2017 (12/10)

(Letter)
Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated
Barbara L Taylor, Lorenzo Rojas-Bracho, Jeffrey Moore, Armando Jaramillo-Legorreta, Jay M Ver Hoef, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Jay Barlow, Tim Gerrodette, Nicholas Tregenza, Len Thomas, Philip Steven Hammond 
Keywords: Extinction, Illegal fishing, Line transect, Phocoena sinus, Totoaba macdonaldi, Vaquita abundance , Passive acoustic monitoring , C-POD
2017 (11)

(Article)
Last call: Passive acoustic monitoring shows continued rapid decline of critically endangered vaquita
Len Thomas, Armando Jaramillo-legorreta, Gustavo Cardenas-hinojosa, Edwyna Nieto-garcia, Lorenzo Rojas-bracho, Jay M. Ver Hoef, Jeffrey Moore, Barbara Taylor, Jay Barlow, Nicholas Tregenza 
2017 (2)

(Article)
Passive acoustic monitoring of the decline of Mexico's critically endangered vaquita
Armando Jaramillo-Legorreta, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Lorenzo Rojas-Bracho, Jay Ver Hoef, Jeffrey Moore, Nicholas Tregenza, Jay Barlow, Tim Gerrodette, Len Thomas, Barbara Taylor 
Keywords: Extinction, Phocoena sinus, Population decline, Statistical modeling
2017 (12)

(Article)
Seals and shipping
Esther Lane Jones, Gordon Drummond Hastie, Sophie Caroline Smout, Joseph Onoufriou, Nathan Merchant, Kate Brookes, David Thompson 
Keywords: Halichoerus grypus, Phoca vitulina, Spatial overlap, AIS, Telemetry, Acoustic propagation, Marine stressor, MSFD, Noise pollution, UncertaintyNERC
2017 (3)

(Article)
Spatio-temporal variation in click production rates of beaked whales
Victoria E. Warren, Tiago A. Marques, Danielle Harris, Len Thomas, Peter Lloyd Tyack, Natacha Aguilar de Soto, Mark Johnson 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics


(Article)
The number and distribution of polar bears in the western Barents Sea
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Ursus maritimus, Distance sampling, Sea ice, Habitat loss, Svalbard, Helicopter
2017 (25/4)

(Article)
Underwater ambient noise in a baleen whale migratory habitat off the Azores
Miriam Romagosa, Irma Cascão, Nathan D. Merchant, Marc O. Lammers, Eva Giacomello, Tiago A. Marques, Mónica A. Silva 
Keywords: Underwater noise, Ship noise, Baleen whale, MSFD, Open ocean environment
2016 (21/9)

(Article)
Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication
Patricia Arranz Alonso, Stacy Lynn De Ruiter, Alison Stimpert, Ari Friedlaender, Jeremy Goldbogen, Fleur Visser, John Calambokidis, Brandon Southall, Peter Lloyd Tyack 
Keywords: Biosonar, Pulsed sound, Buzz, Burst pulse, Jerk, Foraging behavior
2016 (13/7)

(Article)
Echolocation detections and digital video surveys provide reliable estimates of the relative density of harbour porpoises
Laura D. Williamson, Kate L. Brookes, Beth E. Scott, Isla M. Graham, Gareth Bradbury, Philip Steven Hammond, Paul M. Thompson 
Keywords: Abundance, Acoustics, Availability, C-POD, Density surface modelling, Digital survey, Distance sampling, Harbour porpoise
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016 (6)

(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (22/2)

(Article)
Quantifying turnover in biodiversity of British breeding birds
Phil Harrison, Joyce Yuan , Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Andrew Elston, Mark Brewer, Alison Johnston, James Pierce-Higgins 
Keywords: Biodiversity, Breeding Bird Survey, Climate change, Farmland bird community, Species proportions, Turnover, Woodland bird community
2016 (3)

(Article)
Searching for trends in river dolphin abundance
Jeffrey E. Moore, Catalina Gomez-Salazar, Fernando Trujillo, M Louise Burt 
Keywords: Abundance, Cryptic, Habitat loss, River dolphin, Inia, Sotalia, Amazon, Bayesian methods, Monitoring
2016 (6)

(Article)
Using species proportions to quantify turnover in biodiversity
Joyce Yuan , Stephen Terrence Buckland, Phil Harrison, Sergey Foss, Alison Johnston 
Keywords: Biodiversity, Breeding bird survey, Species abundance distribution, Turnover measures
2015 (2)

(Article)
Beyond climate envelopes
Debbie JF Russell, Sarah Wanless, Yvonne Collingham, Barbara Anderson, Colin Beale, James Reid, Brian Huntley, Keith Hamer 
Keywords: Ecological niche modelling, Global warming, Long-term studies, Population monitoring, Space-for-time substitutions, Species distribution model
2015 (6)

(Article)
Developing and enhancing biodiversity monitoring programmes
Michael J. O. Pocock, Stuart E. Newson, Ian G. Henderson, Jodey Peyton, William J. Sutherland, David G. Noble, Stuart G. Ball, Björn C. Beckmann, Jeremy Biggs, Tom Brereton, David J. Bullock, Stephen Terrence Buckland, Mike Edwards, Mark A. Eaton, Martin C. Harvey, Mark O. Hill, Martin Horlock, David S. Hubble, Angela M. Julian, Edward C. Mackey, Darren J. Mann, Matthew J. Marshall, Jolyon M. Medlock, Elaine M. O'Mahony, Marina Pacheco, Keith Porter, Steve Prentice, Deborah A. Procter, Helen E. Roy, Sue E. Southway, Chris R. Shortall, Alan J. A. Stewart, David E. Wembridge, Mark A. Wright, David B. Roy 
Keywords: Biodiversity , Citizen science, Monitoring, Participatory monitoring, Survey, Volunteer, Surveillance
2015 (12)

(Article)
From species to communities
Amy Elizabeth Deacon, Hideyasu Shimadzu, Maria Dornelas, Indar W. Ramnarine, Anne Magurran 
Keywords: Allocation rules, Anthropogenic disturbance, Biodiversity, Community capacity, Diversity indices, Ecosystem services, Freshwater ecology, Poecilia reticulata
2015

(Commissioned report)
2015 (6)

(Article)
Mitigation of vessel-strike mortality of endangered Bryde's whales in the Hauraki Gulf, New Zealand
Rochelle Constantine, Mark Johnson, Leena Riekkola, Stephanie Jervis, Lily Kozmian-Ledward, Todd Dennis, Leigh G. Torres, Natacha Aguilar de Soto 
Keywords: Vessel collision, Balaenoptera edeni, Bryde's whale, DTAG, Conservation, Mitigation
2015 (12/11)

(Article)
Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico
John Hildebrand, Simone Baumann-Pickering, Kaitlin Frasier, Jennifer Trickey, Karlina Merkens, Sean Wiggins, Mark McDonald, Lance Garrison, Danielle Harris, Tiago A. Marques, Len Thomas 
2015 (11)

(Article)
2015 (24/9)

(Article)
Rapid biotic homogenization of marine fish assemblages
Anne Magurran, Maria Dornelas, Faye Helen Moyes, Nicholas J Gotelli, Brian McGill 
2014 (18/4)

(Article)
Assemblage time series reveal biodiversity change but not systematic loss
Maria Dornelas, Nicholas J Gotelli, Brian McGill, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran 
2014 (6)

(Article)
New density estimates of a threatened sifaka species (Propithecus coquereli) in Ankarafantsika National Park
Célia Kun-Rodrigues, Jordi Salmona, Aubin Besolo, Emmanuel Rasolondraibe, Clément Rabarivola, Tiago A. Marques, Lounès Chikhi 
Keywords: Propithecus coquereli, Distance sampling, Population density, Abundance, Edge effect
2014

(Article)
Occurrence, distribution and abundance of cetaceans in Onslow Bay, North Carolina, USA
Andrew, J. Read, S. Barco, J. Bell, David Louis Borchers, M Louise Burt, E.W. Cummings, J. Dunn, J. Fougeres, L. Hazen, L.E. Williams-Hodge, A-M. Laura, R.J. McAlarney, P. Nilsson, D.A. Pabst, Charles G. M. Paxton, S.Z. Schneider, Kim Urian, D.M. Waples, W.A. McLellan 
Keywords: Abundance estimate, Monitoring, Survey-combined, Trends, Photo-ID
2014

(Article)
Towards collective circum-antarctic passive acoustic monitoring
I. Van Opzeeland, F. Samaran, K.M. Stafford, K. Findlay, J. Gedamke, Danielle Harris, B.S. Miller 
2013 (8)

(Article)
Cetacean abundance and distribution in European Atlantic shelf waters to inform conservation and management
Philip Steven Hammond, Kelly Macleod, Per Berggren, David Louis Borchers, M Louise Burt, Ana Cañadas, Genevieve Desportes, Greg P Donovan, Anita Gilles, Douglas Michael Gillespie, Jonathan Charles David Gordon, Lex Hiby, Iwona Kuklik, Russell Leaper, Kristina Lehnert, Mardik Leopold, Philip Lovell, Nils Øien, Charles G. M. Paxton, Vincent Ridoux, Emer Rogan, Filipa Isabel Pereira Samarra, Meike Scheidat, Marina Sequeira, Ursula Siebert, Henrik Skov, Mark Tasker, Jonas Teilmann, Olivier Van Canneyt, José Antonio Vázquez 
Keywords: Conservation status, North Sea, Line transect sampling, SCANS, Harbour porpoise, Bottlenose dolphin, Common dolphin, White-beaked dolphin, Minke whale, Bycatch, Habitats Directive
2013

(Article)
Ecosystem-based management objectives for the North Sea
mark Dickey-Collas, Georg Engelhard, Anna RIndorf, Kristina Raab, Sophie Caroline Smout, Geert Aarts, Martin van Deurs, Thomas Brunel, Ayoe Hoff, Rebecca Lauerberg, Stefan Garthe, Ken Haste Anderson, F Scott, T van Kooten, Douglas Beare, Myron Peck 
Keywords: biomass reserves, ecosystem approach, herring, sandeel, size based, sprat
2013 (6)

(Article)
Using hierarchical bayes to understand movement, health, and survival in the endangered North Atlantic right whale
Robert Schilling Schick, Scott D. Kraus, Rosalind M. Rolland, Amy R. Knowlton, Philip K. Hamilton, Heather M. Pettis, Robert D. Kenney, James S. Clark 
Keywords: Body condition, Health indicator, Mammals, Health change, Population status, Endangered species, State-space model, North Atlantic right whales, Anthropogenic stressors
2012 (7/5)

(Article)
2011

(Article)
Status assessment of the Critically Endangered Azores Bullfinch Pyrrhula murina
Ricardo S. Ceia, Jaime A. Ramos, Ruben H. Heleno, Geoff M. Hilton, Tiago A. Marques