Publications (PURE)

Publications

Recent publications


100  (of 100 published available) for Centre for Research into Ecological & Environmental Modelling with keyword General clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2018 (26/12)
Ecology and Evolution
vol.Early View 
(Article)
Accounting for preferential sampling in species distribution models
Maria Grazia Pennino, Iosu Paradinas, Janine Baerbel Illian, Facundo Muñoz, José María Bellido, Antonio López-Quílez, David Conesa 
Keywords: Bayesian modelling, Integrated nested Laplace approximation, Point processes, Species Distribution Models (SDMs), Stochastic partial differential equation
2018 (10)
Biological Conservation
vol.226 pp.42-53
(Article)
Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions
Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, Alejandro Acevedo-Gutiérrez 
Keywords: Spatial distribution, Passive acoustic monitoring, Population structure, Harbour porpoise, Marine protected areas, Biodiversity conservation
2018 (1)
Marine Pollution Bulletin
vol.126 pp.1-18
(Review article)
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys
Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas 
Keywords: Marine mammals, Monitoring methods, Underwater noise, Seismic survey, Detection performance, Low visibility

Methods in Ecology and Evolution
vol.Early View 
(Article)
Estimating effective detection area of static passive acoustic data loggers from playback experiments with cetacean vocalisations
Hanna K. Nuuttila, Katharina Brundiers, Michael Dähne, Jens C. Koblitz, Len Thomas, Winnie Courtene-Jones, Peter G. H. Evans, John R. Turner, Jim D. Bennell, Jan G. Hiddink 
Keywords: Abundance, C-POD, Density estimation, Detection function, Effective detection radius, Static passive acoustic monitoring

Journal of Agricultural, Biological and Environmental Statistics
vol.First Online 
(Article)
2018 (28/6)
Marine Ecology Progress Series
vol.598 pp.35-48
(Article)
2018 (1/4)
Current Zoology
vol.64 pp.213-221
(Article)

Diversity and Distributions
vol.Early View 
(Article)
How to fit the distribution of apex scavengers into land‐abandonment scenarios? The Cinereous vulture in the Mediterranean biome
Isabel García‐Barón, Ainara Cortés‐Avizanda, Peter H. Verburg, Tiago A. Marques, Rubén Moreno‐Opo, Henrique M. Pereira, José A. Donázar, Lluís Brotons 
Keywords: Aegypius monachus, Socio-economies, European Union, Farmland, Land abandonment, Ecological rewilding
2018 (12)
Spatial Statistics
vol.28 pp.169-193
(Article)
Level set Cox processes
Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian 
Keywords: Point process, Cox process, Level set inversion, Classification, Gaussian fields

Methods in Ecology and Evolution
vol.Early View 
(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC
2018 (4)
Acta Oecologica
vol.88 pp.41-51
(Article)
Seal carrion is a predictable resource for coastal ecosystems
Maria-Martina Quaggiotto, Philip S. Barton, Chris Morris, Simon E. W. Moss, Patrick Pomeroy, Dominic J. McCafferty,  
Keywords: Predictability, Resource subsidy, Coastal, Carcass, Pinniped, Relative standard error, Scavenger
2018 (1/8)
Statistica Neerlandica
vol.72 pp.179-200
(Article)
Spline-based nonparametric inference in general state-switching models
Roland Langrock, Timo Adam, Vianey Leos-Barajas, Sina Mews, David Lawrence Miller, Yannis Papastamatiou 
Keywords: Hidden Markov model, Maximum penalized likelihood, Markov-switching regression, Penalized splines

Ecology and Evolution
vol.Early View 
(Review article)
Understanding the population consequences of disturbance
Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood 
Keywords: Anthropogenic disturbance, Environmental impact assessments, Marine mammals, Nonconsumptive effects, Population consequences, Trait-mediated indirect interactions, Uncertainty
2018 (2)
Oecologia
vol.186 pp.435-446
(Article)
2017 (4)
Ecosphere
vol.8 
(Article)
2017 (23/1)
Environmental Sciences Europe
vol.29 
(Article)
An experiment of the impact of a neonicotinoid pesticide on honeybees
Robert Schilling Schick, Jeremy John Greenwood, Stephen Terrence Buckland 
Keywords: Thiamethoxam, Honeybee, Field experiment, Neonicotinoids, Critical review
2017 (12)
Methods in Ecology and Evolution
vol.8 pp.1690-1702
(Article)
2017 (3/1)
The Bulletin of the Ecological Society of America
vol.98 pp.57-63
(Article)
Best practices for virtual participation in meetings
Stephanie E. Hampton, Benjamin S. Halpern, Marten Winter, Jennifer K. Balch, John N. Parker, Jill S. Baron, Margaret Palmer, Mark P. Schildhauer, Pamela Bishop, Thomas Robert Meagher, Alison Specht 
2017 (1/6)
General and Comparative Endocrinology
vol.247 pp.53-65
(Article)
2017 (5)
Canadian Journal of Fisheries and Aquatic Sciences
vol.74 pp.716-726
(Article)
2017 (1/6)
Conservation Biology
vol.31 pp.601-614
(Article)
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (7/6)
Royal Society Open Science
vol.4 
(Article)
Impact of wild prey availability on livestock predation by snow leopards
Kulbhushansingh R. Suryawanshi, Stephen M. Redpath, Yash Veer Bhatnagar, Uma Ramakrishnan, Vaibhav Chaturvedi, Sophie Caroline Smout, Charudutt Mishra 
Keywords: Apparent competition, Apparent facilitation, Conservation conflicts, Indirect interactions, Predator, Prey interactions, Snow leopardGeneral
2017 (7/2)
Endangered Species Research
vol.32 pp.59-70
(Article)
Late summer distribution and abundance of ice-associated whales in the Norwegian High Arctic
Jade Vacquié-Garcia, Christian Lydersen, Tiago A. Marques, Jon Aars, Heidi Ahonen, Mette Skern-Mauritzen, Nils Oien, Kit M Kovacs 
Keywords: Abundance, Arctic, Belugas, Bowhead whales, Climate change, Distribution, Narwhals, Svalbard, White whales
2017 (14/7)
Pilot and Feasibility Studies
vol.4 
(Article)
MapMySmoke
Robert Schilling Schick, Tom Kelsey, John Marston, Kay Sampson, Gerald Michael Humphris 
Keywords: Smoking cessation, Smartphone, App, Hidden Markov models, Geospatial, INLA
2017 (16/1)
Agriculture, Ecosystems & Environment
vol.237 pp.280-289
(Article)
2017 (2)
Deep Sea Research Part II: Topical Studies in Oceanography
vol.136 pp.108-121
(Article)
2016 (3)
Annals of Applied Statistics
vol.10 pp.264-285
(Article)
2016 (9)
Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology
vol.199 pp.50-57
(Article)
2016 (15/3)
Journal of Scientific Exploration
vol.30 pp.16-26
(Article)
2016 (21/9)
Journal of Experimental Biology
vol.219 pp.2898-2907
(Article)
Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication
Patricia Arranz Alonso, Stacy Lynn De Ruiter, Alison Stimpert, Ari Friedlaender, Jeremy Goldbogen, Fleur Visser, John Calambokidis, Brandon Southall, Peter Lloyd Tyack 
Keywords: Biosonar, Pulsed sound, Buzz, Burst pulse, Jerk, Foraging behavior
2016 (12)
Behavioral Ecology and Sociobiology
vol.70 pp.2161–2174
(Article)
Dynamic habitat corridors for marine predators
Gordon Drummond Hastie, Debbie JF Russell, Steven Benjamins, Simon Moss, Ben Wilson, David Thompson 
Keywords: Foraging, Marine mammal, Oceanographic, Predator, Pinniped, DivingNERC
2016 (10/3)
BMC Cancer
vol.16 
(Article)
Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models
Simon Langdon, Charlene Kay, Kyle Francis, David James Harrison, V Anne Smith 
Keywords: Ovarian cancer, Carboplatin, Pacltaxel, Xenograft, Prognosis, Phosphoproteins
2016 (6)
Journal of Statistical Planning and Inference
vol.173 pp.47-63
(Article)
2016 (3)
Biometrika
vol.103 pp.49-70
(Article)
2016 (6)
Fisheries Research
vol.178 pp.101-113
(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (26/10)
PLoS One
vol.11 
(Article)
Spatial models of abundance and habitat preferences of Commerson’s and Peale’s dolphin in southern Patagonian waters
Natalia A. Dellabianca, Graham J. Pierce, Andrea Raya Rey, Gabriela Scioscia, David Lawrence Miller, Mónica A. Torres, M. Natalia Paso Viola, R. Natalie P. Goodall, Adrián C. M. Schiavini 
Keywords: Medicine(all), Biochemistry, Genetics and Molecular Biology(all), Agricultural and Biological Sciences(all)
2016 (24/6)
Scientific Reports
vol.6 
(Article)
Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning
A. Fais, Mark Johnson, M. Wilson, Natacha Aguilar de Soto, P. T. Madsen 
Keywords: General
2015 (1)
Methods in Ecology and Evolution
vol.6 pp.38-48
(Article)
2015
Journal of the American Statistical Association
vol.110 pp.195-204
(Article)
2015 (14/3)
BMC Genomics
vol.16 
(Article)
2015 (17/2)
Frontiers in Ecology and Evolution
vol.3 
(Article)
Distribution, abundance, and feeding ecology of baleen whales in Icelandic waters: have recent environmental changes had an effect?
Gisli A Vikingsson, Daniel G Pike, Héðinn Valdimarsson, Anna Schleimer, Thorvaldur Gunnlaugsson, Teresa Silva, Bjarki Þ Elvarsson, Bjarni Mikkelsen, Nils Øien, Geneviève Desportes, Valur Bogason, Philip Steven Hammond 
Keywords: Climate change, Finwhale, Common minke whale, Whale abundance, Feeding ecology, Humpback whale, Oceanic warming, Habitat modeling
2015 (20/11)
Ecosphere
vol.6 
(Article)
2015 (3)
Methods in Ecology and Evolution
vol.6 pp.278-288
(Article)
2015 (3/11)
PLoS ONE
vol.10 
(Article)
2015
Endangered Species Research
vol.29 pp.51-58
(Article)
2015 (9)
Journal of Wildlife Management
vol.79 pp.1091-1100
(Article)
2015

(Commissioned report)
2015 (2)
Deep Sea Research Part II: Topical Studies in Oceanography
vol.112 pp.143-157
(Article)
2015 (11)
Oikos
vol.124 pp.1462-1472
(Article)
Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals
Debbie JF Russell, Brett Thomas McClintock, Jason Matthiopoulos, Paul Thompson, David Thompson, Philip Steven Hammond, Esther Lane Jones, Monique MacKenzie, Simon Moss, Bernie J McConnell 
Keywords: Area-restricted search, Bayesian , Energetic requirements, Energy budget, Hidden process models, Pinnipeds, Time budget
2015 (9)
Journal of Agricultural, Biological and Environmental Statistics
vol.20 pp.305-322
(Article)
2015 (21/1)
Journal of Theoretical Biology
vol.365 pp.67-75
(Article)
2015 (12/11)
Scientific Reports
vol.5 
(Article)
Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico
John Hildebrand, Simone Baumann-Pickering, Kaitlin Frasier, Jennifer Trickey, Karlina Merkens, Sean Wiggins, Mark McDonald, Lance Garrison, Danielle Harris, Tiago A. Marques, Len Thomas 
2015 (27/8)
Marine Ecology Progress Series
vol.534 pp.235-249
(Article)
Patterns of space use in sympatric marine colonial predators reveals scales of spatial partitioning
Esther Lane Jones, Bernie J McConnell, Sophie Caroline Smout, Philip Steven Hammond, Callan David Duck, Christopher Morris, David Thompson, Debbie JF Russell, cecile vincent, michelle cronin, Ruth Jemma Sharples, jason matthiopoulos 
Keywords: Halichoerus grypus, Phoca vitulina, Density estimation, Propagating uncertainty, Species distribution, Telemetry, Area-based conservation
2015 (1)
Marine Mammal Science
vol.31 pp.298–321
(Article)
Recommendations for photo-identification methods used in capture-recapture models with cetaceans
Kim Urian, A Gorgone, Andrew J Read, Brian Balmer, Randall S Wells, Per Berggren, John W Durban, Tomo Eguchi, Will Rayment, Philip Steven Hammond 
Keywords: Capture-recapture, Mark-recapture, Photo-identification, Abundance, Population size estimates
2015 (8/6)
Scientific Reports
vol.5 
(Article)
2015 (19/11)
Aquatic Mammals
vol.41 pp.469-502
(Article)
Severity of expert-identified behavioural responses of humpback whale, minke whale, and northern bottlenose whale to naval sonar
Lise D. Sivle, Petter H. Kvadsheim, Charlotte Cure, Saana Isojunno, Paul Wensveen, Frans-Peter A. Lam, Fleur Visser, Lars Kleivane, Peter Lloyd Tyack, Catriona M Harris, Patrick Miller 
Keywords: Behavioural response, Naval sonar, Severity scoring, Humpback whale, Mega, minke whale, Balaenoptera acutorostrata, Northern bottlenose whale, Hyperoodon ampullatus, controlled exposure experiment, arctic biology
2014 (12)
Journal of Applied Ecology
vol.51 pp.1650-1660
(Article)
2014 (15/2)
Marine Pollution Bulletin
vol.79 pp.205-210
(Article)
Behavioral responses by grey seals (Halichoerus grypus) to high frequency sonar
Gordon Drummond Hastie, Carl Robert Donovan, Thomas Goetz, Vincent Janik 
Keywords: Pinnipeds, Acoustic, Behavior, Hearing, AvoidanceNERC
2014 (12)
Hypertension
vol.64 pp.1198-1204
(Article)
Blood pressure differences associated with Optimal Macronutrient Intake Trial for Heart Health (OMNIHEART)–like diet compared with a typical American diet
John Molitor, Ian Brown, Queenie Chan, Michail Papathomas, Silvia Liverani, Nuooting Molitor, Sylvia Richardson, Linda Van Horn, Martha Daviglus, Alan Dyer, Jeremiah Stamler, Paul Elliott 
Keywords: Blood pressure, Hypertension, Nutrients, Statistics
2014 (2)
Journal of the Acoustical Society of America
vol.135 pp.975-993
(Article)
Dose-response relationships for the onset of avoidance of sonar by free-ranging killer whales
Patrick Miller, Ricardo Nuno Antunes, Paul Wensveen, Filipa Isabel Pereira Samarra, Ana Catarina De Carvalho Alves, Peter Lloyd Tyack, Petter H. Kvadsheim, Lars Kleivane, Frans-Peter A. Lam, Michael A. Ainslie, Len Thomas 
2014 (7)
Oryx
vol.48 pp.394-401
(Article)
2014
Environmental and Ecological Statistics
vol.21 pp.715-731
(Article)
2014 (1)
ICES Journal of Marine Science
vol.71 pp.81-89
(Article)
2014
Journal of Cetacean Research and Management
vol.14 pp.23-35
(Article)
Occurrence, distribution and abundance of cetaceans in Onslow Bay, North Carolina, USA
Andrew, J. Read, S. Barco, J. Bell, David Louis Borchers, M Louise Burt, E.W. Cummings, J. Dunn, J. Fougeres, L. Hazen, L.E. Williams-Hodge, A-M. Laura, R.J. McAlarney, P. Nilsson, D.A. Pabst, Charles G. M. Paxton, S.Z. Schneider, Kim Urian, D.M. Waples, W.A. McLellan 
Keywords: Abundance estimate, Monitoring, Survey-combined, Trends, Photo-ID
2014 (7)
Marine Mammal Science
vol.30 pp.923–938
(Article)
2014 (24/12)
Biology Letters
vol.10 
(Article)
Statistical ecology comes of age
Olivier Gimenez, Stephen Terrence Buckland, Byron J. T. Morgan, Nicolas Bez, Sophie Bertrand, Remi Choquet, Stephane Dray, Marie-Pierre Etienne, Rachel Fewster, Frederic Gosselin, Bastien Merigot, Pascal Monestiez, Juan M. Morales, Frederic Mortier, Francois Munoz, Otso Ovaskainen, Sandrine Pavoine, Roger Pradel, Frank M. Schurr, Len Thomas, Wilfried Thuiller, Verena Trenkel, Perry de Valpine, Eric Rexstad 
Keywords: Citizen science, Hidden Markov model, Hierarchical model, Movement ecology, Software package
2014 (4)
Genome Biology and Evolution
vol.6 pp.981-7
(Article)
2014 (9)
ICES Journal of Marine Science
vol.71 pp.1913-1920
(Article)
2014 (27/1)
Marine Ecology Progress Series
vol.496 pp.99-108
(Article)
Using short-term measures of behaviour to estimate long-term fitness of southern elephant seals.
Leslie Frances New, James Clark, Daniel Costa, Erica Fleishman, Mark Hindell, Tin Klanjšček, David Lusseau, Scott Kraus, Clive McMahon, Patrick Robinson, Robert Schilling Schick, Lisa Schwartz, Samantha Simmons, Len Thomas, Peter Lloyd Tyack, John Harwood 
Keywords: Kalman filter, Mirounga leonina, Population consequences of disturbance , State-space model, Telemetry data
2013 (6/9)
PLoS One
vol.8 
(Article)
2013 (4)
Methods in Ecology and Evolution
vol.4 pp.305-315
(Article)
Fitting complex ecological point process models with integrated nested Laplace approximation
Janine Baerbel Illian, Sara Martino, Sigrunn H. Sørbye, Juan B. Gallego-Fernández, Maria Zunzunegui, M. Paz Esquivias, Justin M. Travis 
Keywords: Marked point patterns, Spatial modelling, Log-Gaussian Cox processes
2013 (25/3)
Marine Ecology Progress Series
vol.478 pp.273–285
(Article)
2013 (11)
Methods in Ecology and Evolution
vol.4 pp.1001-1010
(Article)
2013 (1)
Journal of Applied Ecology
vol.50 pp.499-509
(Article)
2013
Biometrics
vol.69 pp.703-713
(Article)
Using hidden Markov models to deal with availability bias on line transect surveys
David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock 
Keywords: Availability bias, Detection hazard, Hidden Markov model, Line transect, Wildlife survey
2012 (12)
Environmental and Ecological Statistics
vol.19 pp.545-572
(Article)
2012 (8)
Ecological Monographs
vol.82 pp.335-349
(Article)
2012 (7/5)
Marine Ecology Progress Series
vol.453 pp.227-240
(Article)
2012 (23/2)
Marine Ecology Progress Series
vol.448 pp.155-170
(Article)
2011 (9/11)
PLoS One
vol.6 
(Article)
Competing conservation objectives for predators and prey
Martin KrkoÅ¡ek, Trevor A Branch, Stephen Clark, Philip Steven Hammond, Eric Hoyt, Dawn P Noren, David Rosen, Arliss Winship 
2010 (6)
International Journal of Primatology
vol.31 pp.485-499
(Article)
2009 (10)
Deep Sea Research Part II: Topical Studies in Oceanography
vol.56 pp.2068-2079
(Article)