Publications (PURE)

Publications

Recent publications


101  (of 101 published available) for Centre for Research into Ecological & Environmental Modelling with keyword General clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (1)

(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC
2018 (10)

(Article)
Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions
Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, Alejandro Acevedo-Gutiérrez 
Keywords: Spatial distribution, Passive acoustic monitoring, Population structure, Harbour porpoise, Marine protected areas, Biodiversity conservation
2018 (1)

(Review article)
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys
Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas 
Keywords: Marine mammals, Monitoring methods, Underwater noise, Seismic survey, Detection performance, Low visibility
2018 (12)

(Article)
Estimating effective detection area of static passive acoustic data loggers from playback experiments with cetacean vocalisations
Hanna K. Nuuttila, Katharina Brundiers, Michael Dähne, Jens C. Koblitz, Len Thomas, Winnie Courtene-Jones, Peter G. H. Evans, John R. Turner, Jim D. Bennell, Jan G. Hiddink 
Keywords: Abundance, C-POD, Density estimation, Detection function, Effective detection radius, Static passive acoustic monitoring


(Article)
How to fit the distribution of apex scavengers into land‐abandonment scenarios? The Cinereous vulture in the Mediterranean biome
Isabel García‐Barón, Ainara Cortés‐Avizanda, Peter H. Verburg, Tiago A. Marques, Rubén Moreno‐Opo, Henrique M. Pereira, José A. Donázar, Lluís Brotons 
Keywords: Aegypius monachus, Socio-economies, European Union, Farmland, Land abandonment, Ecological rewilding
2018 (12)

(Article)
Level set Cox processes
Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian 
Keywords: Point process, Cox process, Level set inversion, Classification, Gaussian fields
2018 (4)

(Article)
Seal carrion is a predictable resource for coastal ecosystems
Maria-Martina Quaggiotto, Philip S. Barton, Chris Morris, Simon E. W. Moss, Patrick Pomeroy, Dominic J. McCafferty,  
Keywords: Predictability, Resource subsidy, Coastal, Carcass, Pinniped, Relative standard error, ScavengerNERC
2018 (1/8)

(Article)
Spline-based nonparametric inference in general state-switching models
Roland Langrock, Timo Adam, Vianey Leos-Barajas, Sina Mews, David Lawrence Miller, Yannis Papastamatiou 
Keywords: Hidden Markov model, Maximum penalized likelihood, Markov-switching regression, Penalized splines


(Review article)
Understanding the population consequences of disturbance
Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood 
Keywords: Anthropogenic disturbance, Environmental impact assessments, Marine mammals, Nonconsumptive effects, Population consequences, Trait-mediated indirect interactions, Uncertainty
2017 (23/1)

(Article)
An experiment of the impact of a neonicotinoid pesticide on honeybees
Robert Schilling Schick, Jeremy John Greenwood, Stephen Terrence Buckland 
Keywords: Thiamethoxam, Honeybee, Field experiment, Neonicotinoids, Critical review
2017 (3/1)

(Article)
Best practices for virtual participation in meetings
Stephanie E. Hampton, Benjamin S. Halpern, Marten Winter, Jennifer K. Balch, John N. Parker, Jill S. Baron, Margaret Palmer, Mark P. Schildhauer, Pamela Bishop, Thomas Robert Meagher, Alison Specht 
2017 (5)

(Article)
2017 (1/6)

(Article)
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (7/6)

(Article)
Impact of wild prey availability on livestock predation by snow leopards
Kulbhushansingh R. Suryawanshi, Stephen M. Redpath, Yash Veer Bhatnagar, Uma Ramakrishnan, Vaibhav Chaturvedi, Sophie Caroline Smout, Charudutt Mishra 
Keywords: Apparent competition, Apparent facilitation, Conservation conflicts, Indirect interactions, Predator, Prey interactions, Snow leopardGeneral
2017 (7/2)

(Article)
Late summer distribution and abundance of ice-associated whales in the Norwegian High Arctic
Jade Vacquié-Garcia, Christian Lydersen, Tiago A. Marques, Jon Aars, Heidi Ahonen, Mette Skern-Mauritzen, Nils Oien, Kit M Kovacs 
Keywords: Abundance, Arctic, Belugas, Bowhead whales, Climate change, Distribution, Narwhals, Svalbard, White whales
2017 (14/7)

(Article)
MapMySmoke
Robert Schilling Schick, Tom Kelsey, John Marston, Kay Sampson, Gerald Michael Humphris 
Keywords: Smoking cessation, Smartphone, App, Hidden Markov models, Geospatial, INLA
2017 (16/1)

(Article)
2016 (9)

(Article)
2016 (15/3)

(Article)
2016 (21/9)

(Article)
Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication
Patricia Arranz Alonso, Stacy Lynn De Ruiter, Alison Stimpert, Ari Friedlaender, Jeremy Goldbogen, Fleur Visser, John Calambokidis, Brandon Southall, Peter Lloyd Tyack 
Keywords: Biosonar, Pulsed sound, Buzz, Burst pulse, Jerk, Foraging behavior
2016 (12)

(Article)
Dynamic habitat corridors for marine predators
Gordon Drummond Hastie, Debbie JF Russell, Steven Benjamins, Simon Moss, Ben Wilson, David Thompson 
Keywords: Foraging, Marine mammal, Oceanographic, Predator, Pinniped, DivingNERC
2016 (10/3)

(Article)
Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models
Simon Langdon, In Hwa Um, Charlene Kay, Kyle Francis, David James Harrison, V Anne Smith 
Keywords: Ovarian cancer, Carboplatin, Pacltaxel, Xenograft, Prognosis, Phosphoproteins
2016 (3)

(Article)
2016 (6)

(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (26/10)

(Article)
Spatial models of abundance and habitat preferences of Commerson’s and Peale’s dolphin in southern Patagonian waters
Natalia A. Dellabianca, Graham J. Pierce, Andrea Raya Rey, Gabriela Scioscia, David Lawrence Miller, Mónica A. Torres, M. Natalia Paso Viola, R. Natalie P. Goodall, Adrián C. M. Schiavini 
Keywords: Medicine(all), Biochemistry, Genetics and Molecular Biology(all), Agricultural and Biological Sciences(all)
2016 (24/6)

(Article)
Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning
A. Fais, Mark Johnson, M. Wilson, Natacha Aguilar de Soto, P. T. Madsen 
Keywords: General
2015 (14/3)

(Article)
2015 (17/2)

(Article)
Distribution, abundance, and feeding ecology of baleen whales in Icelandic waters: have recent environmental changes had an effect?
Gisli A Vikingsson, Daniel G Pike, Héðinn Valdimarsson, Anna Schleimer, Thorvaldur Gunnlaugsson, Teresa Silva, Bjarki Þ Elvarsson, Bjarni Mikkelsen, Nils Øien, Geneviève Desportes, Valur Bogason, Philip Steven Hammond 
Keywords: Climate change, Finwhale, Common minke whale, Whale abundance, Feeding ecology, Humpback whale, Oceanic warming, Habitat modeling
2015 (20/11)

(Article)
2015 (3/11)

(Article)
2015

(Article)
2015

(Commissioned report)
2015 (2)

(Article)
2015 (11)

(Article)
Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals
Debbie JF Russell, Brett Thomas McClintock, Jason Matthiopoulos, Paul Thompson, David Thompson, Philip Steven Hammond, Esther Lane Jones, Monique MacKenzie, Simon Moss, Bernie J McConnell 
Keywords: Area-restricted search, Bayesian , Energetic requirements, Energy budget, Hidden process models, Pinnipeds, Time budgetBEIS/DECC, NERC
2015 (12/11)

(Article)
Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico
John Hildebrand, Simone Baumann-Pickering, Kaitlin Frasier, Jennifer Trickey, Karlina Merkens, Sean Wiggins, Mark McDonald, Lance Garrison, Danielle Harris, Tiago A. Marques, Len Thomas 
2015 (27/8)

(Article)
Patterns of space use in sympatric marine colonial predators reveals scales of spatial partitioning
Esther Lane Jones, Bernie J McConnell, Sophie Caroline Smout, Philip Steven Hammond, Callan David Duck, Christopher Morris, David Thompson, Debbie JF Russell, cecile vincent, michelle cronin, Ruth Jemma Sharples, jason matthiopoulos 
Keywords: Halichoerus grypus, Phoca vitulina, Density estimation, Propagating uncertainty, Species distribution, Telemetry, Area-based conservation
2015 (1)

(Article)
Recommendations for photo-identification methods used in capture-recapture models with cetaceans
Kim Urian, A Gorgone, Andrew J Read, Brian Balmer, Randall S Wells, Per Berggren, John W Durban, Tomo Eguchi, Will Rayment, Philip Steven Hammond 
Keywords: Capture-recapture, Mark-recapture, Photo-identification, Abundance, Population size estimates
2015 (8/6)

(Article)
2015 (19/11)

(Article)
Severity of expert-identified behavioural responses of humpback whale, minke whale, and northern bottlenose whale to naval sonar
Lise D. Sivle, Petter H. Kvadsheim, Charlotte Cure, Saana Isojunno, Paul Wensveen, Frans-Peter A. Lam, Fleur Visser, Lars Kleivane, Peter Lloyd Tyack, Catriona M Harris, Patrick Miller 
Keywords: Behavioural response, Naval sonar, Severity scoring, Humpback whale, Mega, minke whale, Balaenoptera acutorostrata, Northern bottlenose whale, Hyperoodon ampullatus, controlled exposure experiment, arctic biology
2014 (12)

(Article)
2014 (15/2)

(Article)
Behavioral responses by grey seals (Halichoerus grypus) to high frequency sonar
Gordon Drummond Hastie, Carl Robert Donovan, Thomas Goetz, Vincent Janik 
Keywords: Pinnipeds, Acoustic, Behavior, Hearing, AvoidanceNERC
2014 (12)

(Article)
Blood pressure differences associated with Optimal Macronutrient Intake Trial for Heart Health (OMNIHEART)–like diet compared with a typical American diet
John Molitor, Ian Brown, Queenie Chan, Michail Papathomas, Silvia Liverani, Nuooting Molitor, Sylvia Richardson, Linda Van Horn, Martha Daviglus, Alan Dyer, Jeremiah Stamler, Paul Elliott 
Keywords: Blood pressure, Hypertension, Nutrients, Statistics
2014 (2)

(Article)
Dose-response relationships for the onset of avoidance of sonar by free-ranging killer whales
Patrick Miller, Ricardo Nuno Antunes, Paul Wensveen, Filipa Isabel Pereira Samarra, Ana Catarina De Carvalho Alves, Peter Lloyd Tyack, Petter H. Kvadsheim, Lars Kleivane, Frans-Peter A. Lam, Michael A. Ainslie, Len Thomas 
2014

(Article)
Occurrence, distribution and abundance of cetaceans in Onslow Bay, North Carolina, USA
Andrew, J. Read, S. Barco, J. Bell, David Louis Borchers, M Louise Burt, E.W. Cummings, J. Dunn, J. Fougeres, L. Hazen, L.E. Williams-Hodge, A-M. Laura, R.J. McAlarney, P. Nilsson, D.A. Pabst, Charles G. M. Paxton, S.Z. Schneider, Kim Urian, D.M. Waples, W.A. McLellan 
Keywords: Abundance estimate, Monitoring, Survey-combined, Trends, Photo-ID
2014 (24/12)

(Article)
Statistical ecology comes of age
Olivier Gimenez, Stephen Terrence Buckland, Byron J. T. Morgan, Nicolas Bez, Sophie Bertrand, Remi Choquet, Stephane Dray, Marie-Pierre Etienne, Rachel Fewster, Frederic Gosselin, Bastien Merigot, Pascal Monestiez, Juan M. Morales, Frederic Mortier, Francois Munoz, Otso Ovaskainen, Sandrine Pavoine, Roger Pradel, Frank M. Schurr, Len Thomas, Wilfried Thuiller, Verena Trenkel, Perry de Valpine, Eric Rexstad 
Keywords: Citizen science, Hidden Markov model, Hierarchical model, Movement ecology, Software package
2014 (27/1)

(Article)
Using short-term measures of behaviour to estimate long-term fitness of southern elephant seals.
Leslie Frances New, James Clark, Daniel Costa, Erica Fleishman, Mark Hindell, Tin Klanjšček, David Lusseau, Scott Kraus, Clive McMahon, Patrick Robinson, Robert Schilling Schick, Lisa Schwartz, Samantha Simmons, Len Thomas, Peter Lloyd Tyack, John Harwood 
Keywords: Kalman filter, Mirounga leonina, Population consequences of disturbance , State-space model, Telemetry data
2013 (6/9)

(Article)
2013 (4)

(Article)
Fitting complex ecological point process models with integrated nested Laplace approximation
Janine Baerbel Illian, Sara Martino, Sigrunn H. Sørbye, Juan B. Gallego-Fernández, Maria Zunzunegui, M. Paz Esquivias, Justin M. Travis 
Keywords: Marked point patterns, Spatial modelling, Log-Gaussian Cox processes
2013 (1)

(Article)
2013

(Article)
Using hidden Markov models to deal with availability bias on line transect surveys
David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock 
Keywords: Availability bias, Detection hazard, Hidden Markov model, Line transect, Wildlife survey
2012 (8)

(Article)
2012 (7/5)

(Article)
2011 (9/11)

(Article)
Competing conservation objectives for predators and prey
Martin KrkoÅ¡ek, Trevor A Branch, Stephen Clark, Philip Steven Hammond, Eric Hoyt, Dawn P Noren, David Rosen, Arliss Winship 
2010 (6)

(Article)