Publications (PURE)

Publications
107 (of 107 published available) for Centre for Research into Ecological & Environmental Modelling with keyword General clear keyword filter. (source: University of St Andrews PURE)
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Accounting for preferential sampling in species distribution models Maria Grazia Pennino, Iosu Paradinas, Janine Baerbel Illian, Facundo Muñoz, José María Bellido, Antonio López-Quílez, David Conesa
2019
Automated peak detection method for behavioral event identification David A. Sweeney, Stacy L. Deruiter, Ye Joo McNamara-Oh, Tiago A. Marques, Patricia Arranz, J. Calambokidis
2019
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis
2019
Effect of temporal and spatial resolution on identification of fishing activities in small-scale fisheries using pots and traps Tania Mendo, Sophie Caroline Smout, Tommaso Russo, Lorenzo D’Andrea, Mark Andrew James

Estimation of population size when capture probability depends on individual states Hannah Worthington, Rachel McCrea, Ruth King, Richard Griffiths
2019
Hierarchical generalized additive models in ecology Eric J. Pedersen, David Lawrence Miller, Gavin L. Simpson, Noam Ross
2019
Model selection with overdispersed distance sampling data Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl
2019
Population-level consequences of seismic surveys on fishes Hans Slabbekoorn, John Dalen, Dick de Haan, Hendrik V. Winter, Craig Radford, Michael A. Ainslie, Kevin D. Heaney, Tobias van Kooten, Len Thomas, John Harwood

Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, Alejandro Acevedo-Gutiérrez
2018
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas
2018
Estimating effective detection area of static passive acoustic data loggers from playback experiments with cetacean vocalisations Hanna K. Nuuttila, Katharina Brundiers, Michael Dähne, Jens C. Koblitz, Len Thomas, Winnie Courtene-Jones, Peter G. H. Evans, John R. Turner, Jim D. Bennell, Jan G. Hiddink
2018
Fine-scale depth structure of pelagic communities throughout the global ocean based on acoustic sound scattering layers Roland Hudson Proud, Martin Cox, Camille Melanie Marie-Anne Le Guen, Andrew Stuart Brierley
2018
Gradients in predation risk in a tropical river system Amy Elizabeth Deacon, Anne Magurran
2018
How to fit the distribution of apex scavengers into land‐abandonment scenarios? The Cinereous vulture in the Mediterranean biome Isabel García‐Barón, Ainara Cortés‐Avizanda, Peter H. Verburg, Tiago A. Marques, Rubén Moreno‐Opo, Henrique M. Pereira, José A. Donázar, Lluís Brotons

Level set Cox processes Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian
2018
Seal carrion is a predictable resource for coastal ecosystems Maria-Martina Quaggiotto, Philip S. Barton, Chris Morris, Simon E. W. Moss, Patrick Pomeroy, Dominic J. McCafferty,
2018
Spline-based nonparametric inference in general state-switching models Roland Langrock, Timo Adam, Vianey Leos-Barajas, Sina Mews, David Lawrence Miller, Yannis Papastamatiou
2018
Understanding the population consequences of disturbance Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood

Weather-driven change in primary productivity explains variation in the amplitude of two herbivore population cycles in a boreal system Joshua H. Schmidt, Eric Rexstad, Carl A. Roland, Carol L. McIntyre, Margaret C. MacCluskie, Melanie J. Flamme
2018
A new approach to estimate fecundity rate from inter-birth intervals Monica Arso Civil, Barbara Cheney, Paul Thompson, Philip Steven Hammond
2017
An experiment of the impact of a neonicotinoid pesticide on honeybees Robert Schilling Schick, Jeremy John Greenwood, Stephen Terrence Buckland
2017
Attributing changes in the distribution of species abundance to weather variables using the example of British breeding birds Cornelia Sabrina Oedekoven, David Andrew Elston, Phil Harrison, Mark Brewer, Stephen Terrence Buckland, Alison Johnston, Simon Foster, James Pearce-Higgins
2017
Best practices for virtual participation in meetings Stephanie E. Hampton, Benjamin S. Halpern, Marten Winter, Jennifer K. Balch, John N. Parker, Jill S. Baron, Margaret Palmer, Mark P. Schildhauer, Pamela Bishop, Thomas Robert Meagher, Alison Specht
2017
Divergent regulation of insulin-like growth factor binding protein genes in cultured Atlantic salmon myotubes under different models of catabolism and anabolism Daniel Garcia de la Serrana Castillo, Eduardo Nicolas Jofre, Samuel A. M. Martin, Ian Alistair Johnston, Daniel J. Macqueen
2017
Effects of a scientific echo sounder on the behavior of short-finned pilot whales (Globicephala macrorhynchus) Lindesay Alexandra Sarah Scott-Hayward, Dinara Sadykova, Doug Nowacek, Andrew Read
2017
Extrapolating cetacean densities to quantitatively assess human impacts on populations in the high seas Laura Mannocci, Jason J Roberts, David Lawrence Miller, Patrick N Halpin
2017
Harbour Seal Decline – vital rates and drivers. Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall
2017
Impact of wild prey availability on livestock predation by snow leopards Kulbhushansingh R. Suryawanshi, Stephen M. Redpath, Yash Veer Bhatnagar, Uma Ramakrishnan, Vaibhav Chaturvedi, Sophie Caroline Smout, Charudutt Mishra
2017
Late summer distribution and abundance of ice-associated whales in the Norwegian High Arctic Jade Vacquié-Garcia, Christian Lydersen, Tiago A. Marques, Jon Aars, Heidi Ahonen, Mette Skern-Mauritzen, Nils Oien, Kit M Kovacs
2017
MapMySmoke Robert Schilling Schick, Tom Kelsey, John Marston, Kay Sampson, Gerald Michael Humphris
2017
Mediterranean mesocarnivores in spatially structured managed landscapes Gonçalo Curveira-Santos, Tiago A. Marques, Mats Björklund, Margarida Santos-Reis
2017
Penalized nonparametric scalar-on-function regression via principal coordinates Philip T. Reiss, David Lawrence Miller, Pei Shien Wu, Wen Yu Hua
2017
Statistical modelling of individual animal movement Toby A Patterson, Alison Parton, Roland Langrock, Paul G. Blackwell, Len Thomas, Ruth King
2017
Capture-recapture abundance estimation using a semi-complete data likelihood approach Ruth King, Brett Thomas McClintock, David Louis Borchers
2016
Comparison of the transcriptional responses of skeletal muscle and bone to a flooding dose of leucine in the gilthead sea bream (Sparus aurata) Daniel Garcia de la Serrana Castillo, Edson A. Mareco, Vera LA Vieira, Deborah M. Power, Ian Alistair Johnston
2016
Consistency in eyewitness reports of aquatic "monsters" Charles G. M. Paxton, Adrian J. Shine
2016
Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication Patricia Arranz Alonso, Stacy Lynn De Ruiter, Alison Stimpert, Ari Friedlaender, Jeremy Goldbogen, Fleur Visser, John Calambokidis, Brandon Southall, Peter Lloyd Tyack
2016
Dynamic habitat corridors for marine predators Gordon Drummond Hastie, Debbie JF Russell, Steven Benjamins, Simon Moss, Ben Wilson, David Thompson
2016
Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models Simon Langdon, In Hwa Um, Charlene Kay, Kyle Francis, David James Harrison, V Anne Smith
2016
Exploring dependence between categorical variables Michail Papathomas, Sylvia Richardson
2016
Going off grid Daniel Simpson, Janine Baerbel Illian, Finn Lindgren, Sigrunn Sørbye , Haavard Rue
2016
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland
2016
Spatial models of abundance and habitat preferences of Commerson’s and Peale’s dolphin in southern Patagonian waters Natalia A. Dellabianca, Graham J. Pierce, Andrea Raya Rey, Gabriela Scioscia, David Lawrence Miller, Mónica A. Torres, M. Natalia Paso Viola, R. Natalie P. Goodall, Adrián C. M. Schiavini
2016
Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning A. Fais, Mark Johnson, M. Wilson, Natacha Aguilar de Soto, P. T. Madsen
2016
A general framework for animal density estimation from acoustic detections across a fixed microphone array Ben Stevenson, David Louis Borchers, R. Altwegg, Douglas Michael Gillespie, G.J. Measey
2015
A unifying model for capture-recapture and distance sampling surveys of wildlife populations David Louis Borchers, Ben Stevenson, Len Thomas, Tiago A. Marques
2015
Characterization of the transcriptome of fast and slow muscle myotomal fibres in the pacu (Piaractus mesopotamicus) E.A. Mareco, Daniel Garcia de la Serrana Castillo, Ian Alistair Johnston, M. Dal-Pai-Silva
2015
Distribution, abundance, and feeding ecology of baleen whales in Icelandic waters: have recent environmental changes had an effect? Gisli A Vikingsson, Daniel G Pike, Héðinn Valdimarsson, Anna Schleimer, Thorvaldur Gunnlaugsson, Teresa Silva, Bjarki Þ Elvarsson, Bjarni Mikkelsen, Nils Øien, Geneviève Desportes, Valur Bogason, Philip Steven Hammond
2015
Dose response severity functions for acoustic disturbance in cetaceans using recurrent event survival analysis Catriona M Harris, Dinara Sadykova, Stacy Lynn De Ruiter, Peter Lloyd Tyack, Patrick Miller, Petter Kvadsheim, Frans-Peter Lam, Len Thomas
2015
Efficient abstracting of dive profiles using a broken-stick model Theoni Photopoulou, Philip Lovell, Mike Fedak, Len Thomas, Jason Matthiopoulos
2015
Estimating consumption to biomass ratio in non-stationary harvested fish populations Ruben H. Roa-Ureta, David Louis Borchers, Andrés C. Milessi, Mauricio A. Barrientos
2015
Expert elicitation of seasonal abundance of North Atlantic right whales Eubalaena glacialis in the mid-Atlantic Cornelia Sabrina Oedekoven, Erica Fleishman, Philip Hamilton, James S. Clark, Robert Schilling Schick
2015
Habitat selection of gray seals (Halichoerus grypus) in a marine protected area in France Mathilde Huon, Esther Lane Jones, Jason Matthiopoulos, Bernie J McConnell, Florence Caurant, Cécile Vincent
2015
Harbour seal haul-out monitoring, Sound of Islay. Scottish Natural Heritage Commissioned Report No. 894. William Paterson, Debbie JF Russell, Mick Wu, Bernie J McConnell, David Thompson
2015
Inter-annual and seasonal trends in cetacean distribution, density and abundance off southern California G.S. Campbell, Len Thomas, K. Whitaker, A.B. Douglas, J. Calambokidis, J.A. Hildebrand
2015
Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals Debbie JF Russell, Brett Thomas McClintock, Jason Matthiopoulos, Paul Thompson, David Thompson, Philip Steven Hammond, Esther Lane Jones, Monique MacKenzie, Simon Moss, Bernie J McConnell
2015
Modelling production per unit of food consumed in fish populations Mauricio A. Barrientos, Andres C. Milessi, J. C. Quiroz, John Harwood
2015
Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico John Hildebrand, Simone Baumann-Pickering, Kaitlin Frasier, Jennifer Trickey, Karlina Merkens, Sean Wiggins, Mark McDonald, Lance Garrison, Danielle Harris, Tiago A. Marques, Len Thomas
2015
Patterns of space use in sympatric marine colonial predators reveals scales of spatial partitioning Esther Lane Jones, Bernie J McConnell, Sophie Caroline Smout, Philip Steven Hammond, Callan David Duck, Christopher Morris, David Thompson, Debbie JF Russell, cecile vincent, michelle cronin, Ruth Jemma Sharples, jason matthiopoulos
2015
Recommendations for photo-identification methods used in capture-recapture models with cetaceans Kim Urian, A Gorgone, Andrew J Read, Brian Balmer, Randall S Wells, Per Berggren, John W Durban, Tomo Eguchi, Will Rayment, Philip Steven Hammond
2015
Severity of expert-identified behavioural responses of humpback whale, minke whale, and northern bottlenose whale to naval sonar Lise D. Sivle, Petter H. Kvadsheim, Charlotte Cure, Saana Isojunno, Paul Wensveen, Frans-Peter A. Lam, Fleur Visser, Lars Kleivane, Peter Lloyd Tyack, Catriona M Harris, Patrick Miller
2015
Assessing performance of Bayesian state-space models fit to Argos Satellite telemetry locations processed with Kalman Filtering Monica A. Silva, Ian Jonsen, Debbie JF Russell, Rui Prieto, David Thompson, Mark F. Baumgartner
2014
Assessing trends in biodiversity over space and time using the example of British breeding birds Phil Harrison, Stephen Terrence Buckland, Joyce Yuan , David Andrew Elston, M.J. Brewer, A. Johnston, J.W. Pearce-Higgins
2014
Behavioral responses by grey seals (Halichoerus grypus) to high frequency sonar Gordon Drummond Hastie, Carl Robert Donovan, Thomas Goetz, Vincent Janik
2014
Blood pressure differences associated with Optimal Macronutrient Intake Trial for Heart Health (OMNIHEART)–like diet compared with a typical American diet John Molitor, Ian Brown, Queenie Chan, Michail Papathomas, Silvia Liverani, Nuooting Molitor, Sylvia Richardson, Linda Van Horn, Martha Daviglus, Alan Dyer, Jeremiah Stamler, Paul Elliott
2014
Dose-response relationships for the onset of avoidance of sonar by free-ranging killer whales Patrick Miller, Ricardo Nuno Antunes, Paul Wensveen, Filipa Isabel Pereira Samarra, Ana Catarina De Carvalho Alves, Peter Lloyd Tyack, Petter H. Kvadsheim, Lars Kleivane, Frans-Peter A. Lam, Michael A. Ainslie, Len Thomas
2014
Estimating population sizes of lions Panthera leo and spotted hyaenas Crocuta crocuta in Uganda’s savannah parks, using lure count methods Edward Okot Omoya, Tutilo Mudumba, Stephen Terrence Buckland, Paul Mulondo, Andrew J Plumptre
2014
Finite area smoothing with generalized distance splines David Lawrence Miller, Simon Nicholas Wood
2014
Forced monogamy in a multiply mating species does not impede colonisation success Amy Elizabeth Deacon, Miguel Maria Borges Da Costa Guint Barbosa, Anne Magurran
2014
Modelling prey consumption and switching by UK grey seals Sophie Caroline Smout, Anna Rindorf, Philip Steven Hammond, John Harwood, Jason Matthiopoulos
2014
Occurrence, distribution and abundance of cetaceans in Onslow Bay, North Carolina, USA Andrew, J. Read, S. Barco, J. Bell, David Louis Borchers, M Louise Burt, E.W. Cummings, J. Dunn, J. Fougeres, L. Hazen, L.E. Williams-Hodge, A-M. Laura, R.J. McAlarney, P. Nilsson, D.A. Pabst, Charles G. M. Paxton, S.Z. Schneider, Kim Urian, D.M. Waples, W.A. McLellan
2014
Spatial variation in maximum dive depth in gray seals in relation to foraging. Theoni Photopoulou, Mike Fedak, Len Thomas, Jason Matthiopoulos
2014
Statistical ecology comes of age Olivier Gimenez, Stephen Terrence Buckland, Byron J. T. Morgan, Nicolas Bez, Sophie Bertrand, Remi Choquet, Stephane Dray, Marie-Pierre Etienne, Rachel Fewster, Frederic Gosselin, Bastien Merigot, Pascal Monestiez, Juan M. Morales, Frederic Mortier, Francois Munoz, Otso Ovaskainen, Sandrine Pavoine, Roger Pradel, Frank M. Schurr, Len Thomas, Wilfried Thuiller, Verena Trenkel, Perry de Valpine, Eric Rexstad
2014
The effectiveness of a seal scarer at a wild salmon net fishery Rob Harris, Catriona M Harris, Callan David Duck, Ian Boyd
2014
Using short-term measures of behaviour to estimate long-term fitness of southern elephant seals. Leslie Frances New, James Clark, Daniel Costa, Erica Fleishman, Mark Hindell, Tin Klanjšček, David Lusseau, Scott Kraus, Clive McMahon, Patrick Robinson, Robert Schilling Schick, Lisa Schwartz, Samantha Simmons, Len Thomas, Peter Lloyd Tyack, John Harwood
2014
Fitting complex ecological point process models with integrated nested Laplace approximation Janine Baerbel Illian, Sara Martino, Sigrunn H. Sørbye, Juan B. Gallego-Fernández, Maria Zunzunegui, M. Paz Esquivias, Justin M. Travis
2013
Spatial models for distance sampling data David Lawrence Miller, M Louise Burt, Eric Rexstad, Len Thomas
2013
Uncovering the links between foraging and breeding regions in a highly mobile mammal Debbie JF Russell, Bernie J McConnell, David Thompson, Callan David Duck, Chris Morris, John Harwood, Jason Matthiopoulos
2013
Using hidden Markov models to deal with availability bias on line transect surveys David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock
2013
A family of spatial biodiversity measures based on graphs T Rajala, Janine Baerbel Illian
2012
A general discrete-time modeling framework for animal movement using multistate random walks Brett Thomas McClintock, Ruth King, Len Thomas, Jason Matthiopoulos, Bernie J McConnell, Juan Morales
2012
Global analysis of cetacean line-transect surveys Len Thomas, Catriona M Harris, Kristin Kaschner, Philip Steven Hammond,
2012
Harbour porpoise habitat preferences Saana Isojunno, Jason Matthiopoulos,
2012
Competing conservation objectives for predators and prey Martin Krkošek, Trevor A Branch, Stephen Clark, Philip Steven Hammond, Eric Hoyt, Dawn P Noren, David Rosen, Arliss Winship
2011
Line transect sampling of primates Stephen Terrence Buckland, A J Plumptre, Len Thomas, Eric Rexstad
2010
Evolution of the multifaceted eukaryotic akirin gene family Daniel John MacQueen, Ian Alistair Johnston
2009