Publications (PURE)

Publications

Recent publications


59  (of 59 published available) for Centre for Research into Ecological & Environmental Modelling with keyword Estimation clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)
Marine Mammal Science
vol.35 pp.22-39
(Article)
2018 (1/12)
Avian Conservation and Ecology
vol.13 
(Article)

Methods in Ecology and Evolution
vol.Early View 
(Article)
Estimating effective detection area of static passive acoustic data loggers from playback experiments with cetacean vocalisations
Hanna K. Nuuttila, Katharina Brundiers, Michael Dähne, Jens C. Koblitz, Len Thomas, Winnie Courtene-Jones, Peter G. H. Evans, John R. Turner, Jim D. Bennell, Jan G. Hiddink 
Keywords: Abundance, C-POD, Density estimation, Detection function, Effective detection radius, Static passive acoustic monitoring

Journal of Agricultural, Biological and Environmental Statistics
vol.First Online 
(Article)

Journal of the Acoustical Society of America
vol.143 pp.2980-2993
(Article)

ICES Journal of Marine Science
vol.Advance Article 
(Article)
2018 (2)
Journal of the Acoustical Society of America
vol.143 pp.954-967
(Article)
Modelling the broadband propagation of marine mammal echolocation clicks for click-based population density estimates
Alexander von Benda-Beckmann, Len Thomas, Peter Lloyd Tyack, Michael Ainslie 
2017 (23/1)
Environmental Sciences Europe
vol.29 
(Article)
An experiment of the impact of a neonicotinoid pesticide on honeybees
Robert Schilling Schick, Jeremy John Greenwood, Stephen Terrence Buckland 
Keywords: Thiamethoxam, Honeybee, Field experiment, Neonicotinoids, Critical review
2017 (15/6)
Biometrics
vol.73 pp.593-602
(Article)
2017 (9)
Environmental and Ecological Statistics
vol.24 pp.399-414
(Article)
2017 (14/9)
Scientific Reports
vol.7 
(Article)
Fine-scale harbour seal usage for informed marine spatial planning
Esther Lane Jones, Carol Elizabeth Sparling, Bernie J McConnell, Chris Morris, Sophie Caroline Smout 
2017 (10)
Advances in Statistical Analysis
vol.101 pp.475-494
(Article)

Journal of the American Statistical Association

(Article)
Incorporating animal movement into distance sampling
Richard Glennie, Stephen Terrence Buckland, Roland Langrock, Tim Gerrodette, Lisa Ballance, Susan Chivers, Michael Scott, William Perrin 
Keywords: Abundance, Distance sampling, Animal movement
2017 (10)
Biological Conservation
vol.214 pp.23-34
(Article)

Biometrics

(Article)
Open population maximum likelihood spatial capture-recapture
Richard Glennie, David Louis Borchers, Matthew Murchie, Bart Harmsen, Rebecca Foster 
Keywords: Abundance, Survival, Spatial capture-recapture, Open population models
2017 (2/2)
vol.602 
(Commissioned report)
Review of analytical approaches for identifying usage and foraging areas at sea for harbour seals
Esther Lane Jones, Sophie Caroline Smout, Debbie JF Russell, Eunice Pinn, Bernie J McConnell 
Keywords: JNCC
2017 (3)
Journal of the Acoustical Society of America
vol.141 pp.1962-1974
(Article)
Spatio-temporal variation in click production rates of beaked whales
Victoria E. Warren, Tiago A. Marques, Danielle Harris, Len Thomas, Peter Lloyd Tyack, Natacha Aguilar de Soto, Mark Johnson 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics

Polar Research
vol.36 
(Article)
The number and distribution of polar bears in the western Barents Sea
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Ursus maritimus, Distance sampling, Sea ice, Habitat loss, Svalbard, Helicopter
2017 (27/12)
Marine Ecology Progress Series
vol.585 pp.213-227
(Article)
Whale distribution in a breeding area
Daniel Danilewicz, Philip Steven Hammond, Len Thomas, Alexandre N Zerbini 
Keywords: Shelter, Conservation, Density surface model, Cetacean, Line transect, Reproduction
2016 (5)
Statistical Science
vol.31 pp.142-150
(Article)
A conversation with Richard M. Cormack
Stephen Terrence Buckland 
2016 (19/5)
PLoS One
vol.11 pp.1-16
(Article)
An efficient acoustic density estimation method with human detectors applied to gibbons in Cambodia
Benjamin M. Rawson, David Louis Borchers, Ben Stevenson, Tiago A. Marques, Len Thomas 
2016 (17/8)
Journal of Experimental Biology
vol.219 pp.2458-2468
(Article)
2016 (3)
Annals of Applied Statistics
vol.10 pp.264-285
(Article)
2016
Quantitative Finance
vol.16 pp.1615-1630
(Article)
2016 (9)
Journal of the Acoustical Society of America
vol.140 pp.1918-1930
(Article)
Delphinid echolocation click detection probability on near-seafloor sensors
Kaitlin E. Frasier, Sean M. Wiggins, Danielle Harris, Tiago A. Marques, Len Thomas, John A. Hildebrand 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics
2016 (1)
Biometrical Journal
vol.58 pp.222-239
(Article)
2016 (6)
Fisheries Research
vol.178 pp.101-113
(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (1/12)
Ecological Applications
vol.26 pp.2374-2380
(Article)
Re-evaluation of individual diameter
Alicia Ledo, Thomas Cornulier, Janine Baerbel Illian, Yoshiko Iida, Abdul Rahman Kassim, David F. R. P. Burslem 
Keywords: Bias, Biomass, Error, Inaccuracy, Modelling, Tropical forest
2015 (1)
Methods in Ecology and Evolution
vol.6 pp.38-48
(Article)
2015
Journal of the American Statistical Association
vol.110 pp.195-204
(Article)
2015 (12)
Environmental and Ecological Statistics
vol.22 pp.725-737
(Article)
2015 (3/11)
PLoS ONE
vol.10 
(Article)
2015 (21/1)
Journal of Theoretical Biology
vol.365 pp.67-75
(Article)
2015 (12/11)
Scientific Reports
vol.5 
(Article)
Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico
John Hildebrand, Simone Baumann-Pickering, Kaitlin Frasier, Jennifer Trickey, Karlina Merkens, Sean Wiggins, Mark McDonald, Lance Garrison, Danielle Harris, Tiago A. Marques, Len Thomas 
2015 (27/8)
Marine Ecology Progress Series
vol.534 pp.235-249
(Article)
Patterns of space use in sympatric marine colonial predators reveals scales of spatial partitioning
Esther Lane Jones, Bernie J McConnell, Sophie Caroline Smout, Philip Steven Hammond, Callan David Duck, Christopher Morris, David Thompson, Debbie JF Russell, cecile vincent, michelle cronin, Ruth Jemma Sharples, jason matthiopoulos 
Keywords: Halichoerus grypus, Phoca vitulina, Density estimation, Propagating uncertainty, Species distribution, Telemetry, Area-based conservation
2015 (1)
Marine Mammal Science
vol.31 pp.298–321
(Article)
Recommendations for photo-identification methods used in capture-recapture models with cetaceans
Kim Urian, A Gorgone, Andrew J Read, Brian Balmer, Randall S Wells, Per Berggren, John W Durban, Tomo Eguchi, Will Rayment, Philip Steven Hammond 
Keywords: Capture-recapture, Mark-recapture, Photo-identification, Abundance, Population size estimates
2014 (7)
Oryx
vol.48 pp.394-401
(Article)
2014 (1)
Journal of the Royal Statistical Society: Series A (Statistics in Society)
vol.177 pp.209-236
(Article)
2014 (30/4)
Statistics in Medicine
vol.33 pp.1564-1579
(Article)
2014
Condor
vol.116 pp.149-161
(Article)
2014 (2)
Biological Conservation
vol.170 pp.338-339
(Letter)
Large scale surveys for cetaceans
Philip Steven Hammond, Douglas Michael Gillespie, Philip Lovell, Filipa Isabel Pereira Samarra, Kelly Macleod, Mark L Tasker, Per Berggren, David Louis Borchers, M Louise Burt, Charles G. M. Paxton, Ana Canadas, Genevieve Desportes, Greg P Donovan, Anita Gilles, Kristina Lehnert, Ursula Siebert, Jonathan Charles David Gordon, Russell Leaper, Mardik Leopold, Meike Scheidat, Nils Oien, Vincent Ridoux, Emer Rogan, Henrik Skov, Jonas Teilmann, Olivier Van Canneyt, Jose Antonio Vazquez 
Keywords: Line transect sampling, Survey design, Abundance estimation, Cetacean, Conservation, EU Habitats Directive
2014 (1)
ICES Journal of Marine Science
vol.71 pp.81-89
(Article)
2013 (8)
Biological Conservation
vol.164 pp.107-122
(Article)
Cetacean abundance and distribution in European Atlantic shelf waters to inform conservation and management
Philip Steven Hammond, Kelly Macleod, Per Berggren, David Louis Borchers, M Louise Burt, Ana Cañadas, Genevieve Desportes, Greg P Donovan, Anita Gilles, Douglas Michael Gillespie, Jonathan Charles David Gordon, Lex Hiby, Iwona Kuklik, Russell Leaper, Kristina Lehnert, Mardik Leopold, Philip Lovell, Nils Øien, Charles G. M. Paxton, Vincent Ridoux, Emer Rogan, Filipa Isabel Pereira Samarra, Meike Scheidat, Marina Sequeira, Ursula Siebert, Henrik Skov, Mark Tasker, Jonas Teilmann, Olivier Van Canneyt, José Antonio Vázquez 
Keywords: Conservation status, North Sea, Line transect sampling, SCANS, Harbour porpoise, Bottlenose dolphin, Common dolphin, White-beaked dolphin, Minke whale, Bycatch, Habitats Directive
2013 (5)
Biological Reviews of the Cambridge Philosophical Society
vol.88 pp.287–309
(Article)
Estimating animal population density using passive acoustics
Tiago A. Marques, Len Thomas, Stephen Martin, David Mellinger, Jessica Ward, David Moretti, Danielle Harris, Peter Lloyd Tyack 
2013 (11)
Methods in Ecology and Evolution
vol.4 pp.1001-1010
(Article)
2013 (25/12)
Journal of the Acoustical Society of America
vol.134 pp.2469–2476
(Article)
2012 (12/9)
PLoS One
vol.7 
(Article)
2011

(Other report)
Workshop on new developments in cetacean survey methods
David Louis Borchers, Len Thomas, Stephen Terrence Buckland, Hans Skaug, Jay Barlow 
2010

(Commissioned report)
Density estimation implications of increasing ambient noise on beaked whale click detection and classification
Tiago A. Marques, Jessica Ward, Susan Jarvis, David Moretti, Ronald Morrissey, Nancy DiMarzio, Len Thomas 
2010 (3)
Biometrics
vol.66 pp.169-177
(Article)
2009
NAMMCO Scientific Publications
vol.7 
(Article)