Publications (PURE)

Publications

Recent publications


200  (of 243 published available) for Centre for Research into Ecological & Environmental Modelling with keyword App clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.



(Article)
A balance of winners and losers in the Anthropocene
Maria Dornelas, Nicholas J. Gotelli, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran, Brian J. McGill 
Keywords: Anthropogenic, Biodiversity, Colonisation, Extinction, Population change


(Article)
Decline in abundance and apparent survival rates of fin whales (Balaenoptera physalus) in the northern Gulf of St. Lawrence
Christian Ramp, Julien Delarue, Alain Carpentier, Martine Bérubé, Per J. Palsbøl, Richard Sears, Philip Steven Hammond 
Keywords: Abundance, Capture heterogeneity, Capture-recapture, Fin whale, Site fidelity, Survival rate, Terminal bias
2019 (1)

(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC


(Article)
Non-stationary Gaussian models with physical barriers
Haakon Bakka, Jarno Vanhatalo, Janine Baerbel Illian, Daniel Simpson, Haavard Rue 
Keywords: Archipelago, Barriers, Coastline problem, INLA, Spatial statistics, Stochastic partial differential equations


(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica


(Article)
Understanding species distribution in dynamic populations
Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen Votier, Janine Baerbel Illian 
Keywords: Point process models, Spatio-temporal log-Gaussian Cox process, Species distribution modelEcology, Evolution, Behavior and Systematics
2019 (1)

(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops


(Article)
inlabru
Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian 
Keywords: Spatial modeling, Point process, Spatial count, Georeferenced data, Bayesian inference
2018 (5)

(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (10)

(Article)
Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions
Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, Alejandro Acevedo-Gutiérrez 
Keywords: Spatial distribution, Passive acoustic monitoring, Population structure, Harbour porpoise, Marine protected areas, Biodiversity conservation
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (12/7)

(Article)
Body density of humpback whales (Megaptera novaengliae) in feeding aggregations estimated from hydrodynamic gliding performance
Tomoko Narazaki, Saana Isojunno, Douglas P. Nowacek, Ari S. Friedlaender, Christian Ramp, Sophie Caroline Smout, Kagari Aoki, Volker Bernt Deecke, Katsufumi Sato, Patrick Miller 
2018 (2)

(Article)
Cetacean rapid assessment: an approach to fill knowledge gaps and target conservation across large data deficient areas
Gillian Tracey Braulik, Magreth Kasuga, Anja Wittich, Jeremy J Kiszka, Jamie Donald John MacAulay, Douglas Michael Gillespie, Jonathan Charles David Gordon, Said Shaib Said, Philip Steven Hammond 
Keywords: Cetaceans, Distribution, Environmental impact assessement, Management, Marine spatial planning, Rapid assessment, Tanzania
2018 (18/7)

(Review article)
2018 (3)

(Article)
Harbour seals avoid tidal turbine noise
Gordon Drummond Hastie, Debbie JF Russell, Paul Lepper, Jim Elliott, Ben Wilson, Steven Benjamins, David Thompson 
Keywords: Collision risk, Marine mammals, Avoidance, Renewable energy, Pinnipeds, Marine spatial planning, Underwater noise, Tidal turbines, Behavioural responsesNERC


(Article)
How to fit the distribution of apex scavengers into land‐abandonment scenarios? The Cinereous vulture in the Mediterranean biome
Isabel García‐Barón, Ainara Cortés‐Avizanda, Peter H. Verburg, Tiago A. Marques, Rubén Moreno‐Opo, Henrique M. Pereira, José A. Donázar, Lluís Brotons 
Keywords: Aegypius monachus, Socio-economies, European Union, Farmland, Land abandonment, Ecological rewilding


(Article)
Identifying prognostic structural features in tissue sections of colon cancer patients using point pattern analysis
Peter David Caie, Janine Baerbel Illian, Ben C. Stevenson, Anne Savage, David James Harrison, James L. Brown 
Keywords: Colorectal cancer, Palm intensity function, Spatial point patterns
2018 (12)

(Article)
Level set Cox processes
Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian 
Keywords: Point process, Cox process, Level set inversion, Classification, Gaussian fields
2018 (1)

(Review article)
Marine mammals and sonar
Catriona M Harris, Len Thomas, Erin Falcone, John Hildebrand, Dorian Houser, Petter Kvadsheim, Frans-Peter A. Lam, Patrick Miller, David J. Moretti, Andrew Read, Hans Slabbekoorn, Brandon L. Southall, Peter Lloyd Tyack, Douglas Wartzok, Vincent Janik 
Keywords: Sonar, Cetaceans, Human disturbance, Impact assessment, Anti-predator response, Anthropogenic noise, Behavioural response, Marine mammals, Dose response
2018 (2)

(Article)
Modelling the broadband propagation of marine mammal echolocation clicks for click-based population density estimates
Alexander von Benda-Beckmann, Len Thomas, Peter Lloyd Tyack, Michael Ainslie 
2018 (25/7)

(Article)
2018 (8/1)

(Article)
Primary education in Vietnam and pupil online engagement
Quynh Nguyen, Raouf Naguib, Ashish Das, Michail Papathomas, Edgar Vallar, Nilmini Wickramasinghe, Gil Nonato Santos, Maria Cecilia Galvez, Viet Nguyen 
Keywords: Pedagogy, Computer Science, Internet, Urban and rural schools, North Vietnam
2018 (12)

(Article)
Simulating shifts in taxonomic and functional β-diversity of ray-finned fishes
Anderson Aires Eduardo, Faye Helen Moyes, Pablo Ariel Martinez, Anne Magurran, Sidney F. Gouveia 
Keywords: Actinopterygii, Biodiversity loss, Functional diversity, Nestedness, Turnover


(Review article)
Spatial modeling with R-INLA
Haakon Bakka, HÃ¥vard Rue, Geir-arne Fuglstad, Andrea Riebler, David Bolin, Janine Baerbel Illian, Elias Krainski, Daniel Simpson, Finn Lindgren 
Keywords: Approximate Bayesian inference, Gaussian Markov random fields, Laplace approximations, Sparse matrices, Stochastic partial differential equations
2018 (1/8)

(Article)
Spline-based nonparametric inference in general state-switching models
Roland Langrock, Timo Adam, Vianey Leos-Barajas, Sina Mews, David Lawrence Miller, Yannis Papastamatiou 
Keywords: Hidden Markov model, Maximum penalized likelihood, Markov-switching regression, Penalized splines
2018 (2)

(Article)
The challenge of habitat modelling for threatened low density species using heterogeneous data
Ana Maria Canadas, Natacha Aguilar de Soto, M. Aissi, A. Arcangeli, M. Azzolin, A. B-Nagy, G Bearzi, I. Campana, C. Chicote, Cedric Cotte, R. Crosti, L David, A. Di Natale, A. Frantzis, P. Garcia, M. Gazo, R. Gutierrez-Xarxa, D. Holcer, S. Laran, G. Lauriano, T Lewis, A. Moulins, B. Mussi, G. Notarbartolo di Sciara, Simone Panigada, X. Pastor, E. Politi, M. Pulcini, J.A. Raga, Luke Edward Rendell, M. Rosso, P. Tepsich, J. Tomás, M. Tringali, Th. Roger 
Keywords: Cuvier’s beaked whales, Abundance, Distribution, Conservation, Density surface modelling, Correction factor, Mediterranean sea
2018 (12/6)

(Article)
Turbulent flow reduces oxygen consumption in the labriform swimming shiner perch, Cymatogaster aggregata
Julie M. van der Hoop, Margaret L. Byron, Karlina Ozolina, David Lawrence Miller, Jacob L. Johansen, Paolo Domenici, John F. Steffensen 
Keywords: Vortex, Eddy, Gait, Swimming kinematics, Metabolism, Space use
2018 (31/12)

(Article)


(Review article)
Understanding the population consequences of disturbance
Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood 
Keywords: Anthropogenic disturbance, Environmental impact assessments, Marine mammals, Nonconsumptive effects, Population consequences, Trait-mediated indirect interactions, Uncertainty
2017 (4)

(Article)
A simulation approach to assessing environmental risk of sound exposure to marine mammals
Carl Robert Donovan, Catriona M Harris, Lorenzo Milazzo, John Harwood, Laura Helen Marshall,  
Keywords: Agent-based models, Grey seal, Harbour porpoise, Risk assessment, Underwater sound
2017 (14/8)

(Article)
Addressing uncertainty in marine resource management; combining community engagement and tracking technology to characterize human behavior
Kristian Metcalfe, Tim Collins, Kirsten E. Abernethy, Richard Boumba, Jean-Claude Dengui, Ricky Miyalou, Richard J. Parnell, Kate E. Plummer, Debbie JF Russell, Gilbert Koumba Safou, Dominic Tilley, Rachel A. Turner, Hilde Vanleeuwe, Matthew J. Witt, Brendan J. Godley 
Keywords: Africa, Artisanal fisheries, Behaviour, Fisheries management, Marine spatial planning, Participatory data collection, Resource use, Small-scale fisheries
2017 (9)

(Article)
2017 (23/1)

(Article)
An experiment of the impact of a neonicotinoid pesticide on honeybees
Robert Schilling Schick, Jeremy John Greenwood, Stephen Terrence Buckland 
Keywords: Thiamethoxam, Honeybee, Field experiment, Neonicotinoids, Critical review
2017 (10/8)

(Article)
Animal Counting Toolkit
Katie Gaut, Rowenna Gryba, Jeffrey Moore, Eric Rexstad, Doug Sandilands, Justin Steventon, Randall Reeves 
Keywords: Abundance, Boat, Bycatch, Capacity, Conservation, Dolphin
2017 (31/1)

(Article)
Assigning stranded bottlenose dolphins to source stocks using stable isotope ratios following the Deepwater Horizon oil spill
A A Hohn, Len Thomas, R. H. Carmichael, J. Litz, C. Clemons-Chevis, S. F. Shippee, C. Sinclair, S. Smith, T. R. Speakman, M. C. Tumlin, E. S. Zolman 
Keywords: Carbon, Gulf of Mexico, Nitrogen, Stock structure, Sulfur, Tursiops truncatusEcology, Nature and Landscape Conservation
2017 (3)

(Review article)
Bayesian computing with INLA
Haavard Rue, Andrea Riebler, Sigrunn H. Sørbye, Janine Baerbel Illian, Daniel P. Simpson, Finn K. Lindgren 
Keywords: Gaussian Markov random field, Laplace approximations, Approximate Bayesian inference, Latest Gaussian models, Numerical integration, Sparse matrices
2017 (6)

(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (11)

(Article)
Distance sampling with camera traps
Stephen Terrence Buckland, Marie-Lyne Despres-Einspenner, Hjalmar Kuhn 
Keywords: Animal abundance, Camera trapping, Density, Distance sampling, Maxwell's duiker
2017 (2)

(Article)
Estimates of local biodiversity change over time stand up to scrutiny
Mark Vellend, Maria Dornelas, Lander Baeten, Robin Beauséjour, Carissa D. Brown, Pieter De Frenne, Sarah C. Elmendorf, Nicholas J Gotelli, Faye Helen Moyes, Isla H. Myers-Smith, Anne Magurran, Brian J. McGill, Hideyasu Shimadzu,  
Keywords: Biodiversity, Meta-analysis, Species richness, Temporal change
2017 (7)

(Article)
Estimating cetacean density and abundance in the Central and Western Mediterranean Sea through aerial surveys
Simone Panigada, Giancarlo Lauriano, Greg Donovan, Nino Pierantonio, Ana Cañadas, José Antonio Vázquez, M Louise Burt 
2017 (1/6)

(Article)
2017 (14/9)

(Article)
Fine-scale harbour seal usage for informed marine spatial planning
Esther Lane Jones, Carol Elizabeth Sparling, Bernie J McConnell, Chris Morris, Sophie Caroline Smout 
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (7/6)

(Article)
Impact of wild prey availability on livestock predation by snow leopards
Kulbhushansingh R. Suryawanshi, Stephen M. Redpath, Yash Veer Bhatnagar, Uma Ramakrishnan, Vaibhav Chaturvedi, Sophie Caroline Smout, Charudutt Mishra 
Keywords: Apparent competition, Apparent facilitation, Conservation conflicts, Indirect interactions, Predator, Prey interactions, Snow leopardGeneral
2017 (10)

(Article)


(Article)
Incorporating animal movement into distance sampling
Richard Glennie, Stephen Terrence Buckland, Roland Langrock, Tim Gerrodette, Lisa Ballance, Susan Chivers, Michael Scott, William Perrin 
Keywords: Abundance, Distance sampling, Animal movement
2017 (11)

(Article)
Last call: Passive acoustic monitoring shows continued rapid decline of critically endangered vaquita
Len Thomas, Armando Jaramillo-legorreta, Gustavo Cardenas-hinojosa, Edwyna Nieto-garcia, Lorenzo Rojas-bracho, Jay M. Ver Hoef, Jeffrey Moore, Barbara Taylor, Jay Barlow, Nicholas Tregenza 
2017 (8/3)

(Article)
Low tortoise abundances in pine forest plantations in forest-shrubland transition areas
Roberto C. Rodríguez-Caro, Cornelia Sabrina Oedekoven, Eva Graciá, José D. Anadón, Stephen Terrence Buckland, Miguel A. Esteve-Selma, Julia Martinez, Andrés Giménez 
2017 (14/7)

(Article)
MapMySmoke
Robert Schilling Schick, Tom Kelsey, John Marston, Kay Sampson, Gerald Michael Humphris 
Keywords: Smoking cessation, Smartphone, App, Hidden Markov models, Geospatial, INLA
2017 (16/1)

(Article)
2017 (7)

(Letter)
Model-based approaches to deal with detectability
Tiago A. Marques, Len Thomas, Marc Kery, Stephen Terrence Buckland, David Louis Borchers, Eric Rexstad, Rachel M. Fewster, Darryl I. Mackenzie, J. Andrew Royle, Gurutzeta Guillera-Arroita, Colleen M. Handel, David C. Pavlacky, Richard Joseph Camp 
Keywords: Relative-abundance, Distance, Occupancy


(Article)
Open population maximum likelihood spatial capture-recapture
Richard Glennie, David Louis Borchers, Matthew Murchie, Bart Harmsen, Rebecca Foster 
Keywords: Abundance, Survival, Spatial capture-recapture, Open population models
2017 (12)

(Article)
Point process models for spatio-temporal distance sampling data from a large-scale survey of blue whales
Joyce Yuan , F. E. Bachl, F. Lindgren, David Louis Borchers, Janine Baerbel Illian, Stephen Terrence Buckland, H Rue, T. Gerrodette 
2017 (31/1)

(Article)
2017 (23/11)

(Article)
Rapid changes in Atlantic grey seal milk from birth to weaning – immune factors and indicators of metabolic strain
Amanda D. Lowe, Sami Bawazeer, David G. Watson, Suzanne McGill, Richard J.S. Burchmore, Patrick Pomeroy, Malcolm W. Kennedy 
Keywords: NERC
2017 (6)

(Article)
Rebuilding beluga stocks in West Greenland
M. P. Heide-Jørgensen, R. G. Hansen, S. Fossette, N. H. Nielsen, David Louis Borchers, H. Stern, L. Witting 
Keywords: Aerial survey, Bayesian assessment, Hidden Markov model, Line transect, Beluga, Sea ice cover, Abundance estimates, Cetaceans
2017 (2/2)

(Commissioned report)
Review of analytical approaches for identifying usage and foraging areas at sea for harbour seals
Esther Lane Jones, Sophie Caroline Smout, Debbie JF Russell, Eunice Pinn, Bernie J McConnell 
Keywords: JNCC
2017 (12)

(Article)
Seals and shipping
Esther Lane Jones, Gordon Drummond Hastie, Sophie Caroline Smout, Joseph Onoufriou, Nathan Merchant, Kate Brookes, David Thompson 
Keywords: Halichoerus grypus, Phoca vitulina, Spatial overlap, AIS, Telemetry, Acoustic propagation, Marine stressor, MSFD, Noise pollution, UncertaintyNERC


(Article)
Spatial distribution of citizen science casuistic observations for different taxonomic groups
Patrícia Tiago, Ana Ceia-Hasse, Tiago A. Marques, César Capinha, Henrique M. Pereira 
2017 (3)

(Article)
Spatio-temporal variation in click production rates of beaked whales
Victoria E. Warren, Tiago A. Marques, Danielle Harris, Len Thomas, Peter Lloyd Tyack, Natacha Aguilar de Soto, Mark Johnson 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics
2017 (31/1)

(Article)
Survival, density, and abundance of common bottlenose dolphins in Barataria Bay (USA) following the Deepwater Horizon oil spill
Trent L. McDonald, Fawn E. Hornsby, Todd R. Speakman, Eric S. Zolman, Keith D. Mullin, Carrie Sinclair, Patricia E. Rosel, Len Thomas, Lori H. Schwacke 
Keywords: Capture-recapture, Photo-identification, Robust design, Spatial-capture model, Tursiops truncatusEcology, Nature and Landscape Conservation


(Article)
The number and distribution of polar bears in the western Barents Sea
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Ursus maritimus, Distance sampling, Sea ice, Habitat loss, Svalbard, Helicopter
2017 (25/4)

(Article)
Underwater ambient noise in a baleen whale migratory habitat off the Azores
Miriam Romagosa, Irma Cascão, Nathan D. Merchant, Marc O. Lammers, Eva Giacomello, Tiago A. Marques, Mónica A. Silva 
Keywords: Underwater noise, Ship noise, Baleen whale, MSFD, Open ocean environment
2016 (5)

(Article)
A conversation with Richard M. Cormack
Stephen Terrence Buckland 
2016 (21/3)

(Article)
Abundance and distribution of sperm whales in the Canary Islands
Andrea Fais, Tim P. Lewis, Daniel P. Zitterbart, Omar Álvarez, Ana Tejedor, Natacha Aguilar de Soto 
2016 (12)

(Article)
Aerial low frequency hearing in captive and free-ranging harbour seals (Phoca vitulina) using auditory brainstem responses
Klaus Lucke, Gordon Drummond Hastie, Kerstin Ternes, Bernie J McConnell, Simon Moss, Debbie JF Russell, Heike Weber, Vincent Janik 
Keywords: Harbour seal , Phoca vitulina, Hearing, ABR, Low-frequencyNERC
2016 (28/12)

(Article)
An assessment of the population of cotton-top tamarins (Saguinus oedipus) and their habitat in Colombia
Anne Savage, Len Thomas, Katie L. Feilen, Luis H. Soto, Mackenzie Pearson, Felix S. Medina, German Emeris, Rosamira R. Guillen 
Keywords: Medicine(all), Biochemistry, Genetics and Molecular Biology(all), Agricultural and Biological Sciences(all)
2016 (19/5)

(Article)
An efficient acoustic density estimation method with human detectors applied to gibbons in Cambodia
Benjamin M. Rawson, David Louis Borchers, Ben Stevenson, Tiago A. Marques, Len Thomas 
2016 (12)

(Article)
Avoidance of wind farms by harbour seals is limited to pile driving activities
Debbie JF Russell, Gordon Drummond Hastie, David Thompson, Vincent Janik, Philip Steven Hammond, Lindesay Alexandra Sarah Scott-Hayward, Jason Matthiopoulos, Esther Lane Jones, Bernie J McConnell 
Keywords: Complex Region Spatial Smoother, Disturbance, Marine renewables, Marine spatial planning, Pinnipeds, Renewable energy, Spatially Adaptive Local Smoothing Algorithm, Spatially adaptive smoothing , Underwater noiseNERC, BEIS/DECC, Scottish Government
2016 (17/8)

(Article)
2016 (15/3)

(Article)
2016 (9)

(Article)
Delphinid echolocation click detection probability on near-seafloor sensors
Kaitlin E. Frasier, Sean M. Wiggins, Danielle Harris, Tiago A. Marques, Len Thomas, John A. Hildebrand 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics
2016 (21/3)

(Article)
Enhanced pelagic biomass around coral atolls
Tom B. Letessier, Martin J. Cox, Jessica J. Meeuwig, Philipp H. Boersch-Supan, Andrew Stuart Brierley 
Keywords: Oceanic, Acoustic scatterers, Seamount, Tuna, Reserve, Coral reefsAquatic Science, Ecology, Ecology, Evolution, Behavior and Systematics
2016 (12)

(Review article)
From physiology to policy
Natacha Aguilar de Soto, Sascha Kate Hooker, Saana Isojunno, Mark Johnson, Patrick Miller, Peter Lloyd Tyack, Paul Wensveen, Carl Robert Donovan, Catriona M Harris, Danielle Harris, Laura Helen Marshall, Cornelia Sabrina Oedekoven, Rocio Prieto, Len Thomas 
2016 (3)

(Article)
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016 (16/9)

(Conference contribution)
MLCut
A Vogogias, J Kennedy, D Archaumbault, V Anne Smith, Hannah Currant 
2016 (22/11)

(Poster)
MapMySmoke–a context aware mobile phone application targeted at smoking cessation
Robert Schilling Schick, Gerald Michael Humphris, Tom Kelsey, Marston John, Sampson Kay 
2016 (3)

(Article)
Model-based distance sampling
Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Louis Borchers 
Keywords: Distance sampling, Line transect sampling, Model-based inference, Point transect sampling
2016 (29/12)

(Article)
Naval sonar disrupts foraging behaviour in humpback whales
Lise D. Sivle, Paul Wensveen, Petter Kvadsheim, Frans-Peter A. Lam, Fleur Visser, Charlotte Cure, Catriona M Harris, Peter Lloyd Tyack, Patrick Miller 
Keywords: Humpback whale, Megaptera novaeangliae, Naval sonar, Behavioral response, Lung feeding
2016 (26/10)

(Review article)
2016 (6)

(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (22/2)

(Article)
Quantifying turnover in biodiversity of British breeding birds
Phil Harrison, Joyce Yuan , Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Andrew Elston, Mark Brewer, Alison Johnston, James Pierce-Higgins 
Keywords: Biodiversity, Breeding Bird Survey, Climate change, Farmland bird community, Species proportions, Turnover, Woodland bird community
2016 (1/12)

(Article)
Re-evaluation of individual diameter
Alicia Ledo, Thomas Cornulier, Janine Baerbel Illian, Yoshiko Iida, Abdul Rahman Kassim, David F. R. P. Burslem 
Keywords: Bias, Biomass, Error, Inaccuracy, Modelling, Tropical forest
2016 (3)

(Article)
Searching for trends in river dolphin abundance
Jeffrey E. Moore, Catalina Gomez-Salazar, Fernando Trujillo, M Louise Burt 
Keywords: Abundance, Cryptic, Habitat loss, River dolphin, Inia, Sotalia, Amazon, Bayesian methods, Monitoring
2016 (26/10)

(Article)
Spatial models of abundance and habitat preferences of Commerson’s and Peale’s dolphin in southern Patagonian waters
Natalia A. Dellabianca, Graham J. Pierce, Andrea Raya Rey, Gabriela Scioscia, David Lawrence Miller, Mónica A. Torres, M. Natalia Paso Viola, R. Natalie P. Goodall, Adrián C. M. Schiavini 
Keywords: Medicine(all), Biochemistry, Genetics and Molecular Biology(all), Agricultural and Biological Sciences(all)
2016

(Conference contribution)
The challenges of analyzing behavioral response study data
Catriona M Harris, Len Thomas, Dinara Sadykova, Stacy Lynn De Ruiter, Peter Lloyd Tyack, Brandon L. Southall, Andrew J. Read, Patrick Miller 
Keywords: Sonar, Cetaceans, Change-point, Dose-response, State-space modelling
2016 (7)

(Article)
Tracking the kinematics of caudal-oscillatory swimming
Lucía Martina Martín López, Natacha Aguilar de Soto, Patrick Miller, Mark Johnson 
Keywords: Gyroscope, Accelerometer, Magnetometer, Specific acceleration, Body rotation, Swimming kinematics
2016 (6)

(Article)
Using hierarchical centering to facilitate a reversible jump MCMC algorithm for random effects models
Cornelia Sabrina Oedekoven, R. King , Stephen Terrence Buckland, Monique Lea MacKenzie, K. O. Evans, L. W Burger Jr. 
Keywords: Combined likelihood, "Metropolis Hastings", Point transect sampling, Random effects, Reparameterisation
2015

(Article)
2015 (18/3)

(Article)
Adapting to a warmer ocean – seasonal shift of baleen whale movements over three decades
Christian Ramp, Julian Delarue, Per J Palsbøll, Richard Sears, Philip Steven Hammond 
2015 (13/1)

(Article)
An alternative method for correcting fluorescence quenching
Christophe Guinet, Marthan Bester, Andrew Stuart Brierley, Lars Boehme 
2015 (2)

(Article)
Beyond climate envelopes
Debbie JF Russell, Sarah Wanless, Yvonne Collingham, Barbara Anderson, Colin Beale, James Reid, Brian Huntley, Keith Hamer 
Keywords: Ecological niche modelling, Global warming, Long-term studies, Population monitoring, Space-for-time substitutions, Species distribution model
2015 (8)

(Article)
Conspecific recognition and aggression reduction to familiars in newly weaned, socially plastic mammals
Kelly Joanne Robinson, Sean Twiss, Neil Hazon, Simon Moss, Mike Lonergan, Patrick Pomeroy 
Keywords: Aggression, Grey seal, Mammal, Oxytocin, Pinniped, RecognitionNERC
2015 (6)

(Article)
Developing and enhancing biodiversity monitoring programmes
Michael J. O. Pocock, Stuart E. Newson, Ian G. Henderson, Jodey Peyton, William J. Sutherland, David G. Noble, Stuart G. Ball, Björn C. Beckmann, Jeremy Biggs, Tom Brereton, David J. Bullock, Stephen Terrence Buckland, Mike Edwards, Mark A. Eaton, Martin C. Harvey, Mark O. Hill, Martin Horlock, David S. Hubble, Angela M. Julian, Edward C. Mackey, Darren J. Mann, Matthew J. Marshall, Jolyon M. Medlock, Elaine M. O'Mahony, Marina Pacheco, Keith Porter, Steve Prentice, Deborah A. Procter, Helen E. Roy, Sue E. Southway, Chris R. Shortall, Alan J. A. Stewart, David E. Wembridge, Mark A. Wright, David B. Roy 
Keywords: Biodiversity , Citizen science, Monitoring, Participatory monitoring, Survey, Volunteer, Surveillance
2015

(Book)
Distance sampling
Stephen Terrence Buckland, Eric Rexstad, Tiago A. Marques, Cornelia Sabrina Oedekoven 
2015 (20/11)

(Article)
2015 (3/11)

(Article)
2015 (12)

(Article)
From species to communities
Amy Elizabeth Deacon, Hideyasu Shimadzu, Maria Dornelas, Indar W. Ramnarine, Anne Magurran 
Keywords: Allocation rules, Anthropogenic disturbance, Biodiversity, Community capacity, Diversity indices, Ecosystem services, Freshwater ecology, Poecilia reticulata
2015 (7/8)

(Article)
Green plants in the red
Neil Brummitt, Steven Bachman, Janine Griffiths-Lee, Maiko Lutz, Justin Moat, Aljos Farjon, John Donaldson, Craig Hilton-Taylor, Thomas Robert Meagher, Sara Albuquerque, Elina Aletrari, A. Kei Andrews, Guy Atchison, Elisabeth Baloch, Barbara Barlozzini, Alice Brunazzi, Julia Carretero, Marco Celesti, Helen Chadburn, Eduardo Ciafoni, Chris Cockel, Vanessa Coldwell, Benedetta Concetti, Sara Contu, Vicki Crook, Philippa Dyson, Lauren Gardiner, Nadia Ghanim, Hannah Greene, Alice Groom, Ruth Harker, Della Hopkins, Sonia Khela, Poppy Lakeman-Fraser, Heather Lindon, Helen Lockwood, Christine Loftu, Debora Lombrici, Lucia Lopez-Poveda, James Lyon, Patricia Malcolm-Tompkins, Kirsty McGregor, Laura Moreno, Linda Murray, Keara Nazar, Eimear Nic Lughadha 
2015 (10)

(Article)
Impacts of anthropogenic noise on marine life
Andrew J Wright, LK Blight, R Bruintjes, R Canessa, CW Clark, S Cullis-Suzuki, DT Dakin, C Erbe, Philip Steven Hammond, MD Merchant, PD O'Hara, J Purser, AN Radford, SD Simpson, Len Thomas, MA Wale 
Keywords: Anthropogenic, Conservation, Ecology, Marine, Ocean noise, Policy, Shipping
2015 (12)

(Article)
2015 (6)

(Article)
Mitigation of vessel-strike mortality of endangered Bryde's whales in the Hauraki Gulf, New Zealand
Rochelle Constantine, Mark Johnson, Leena Riekkola, Stephanie Jervis, Lily Kozmian-Ledward, Todd Dennis, Leigh G. Torres, Natacha Aguilar de Soto 
Keywords: Vessel collision, Balaenoptera edeni, Bryde's whale, DTAG, Conservation, Mitigation
2015 (20/3)

(Article)
2015 (22/4)

(Article)
Predator sound playbacks reveal strong avoidance responses in a fight strategist baleen whale
Charlotte Cure, Lise Doksaeter-Sivle, Fleur Visser, Paul Wensveen, Saana Isojunno, Catriona M Harris, Petter Kvadsheim, Frans-Peter Lam, Patrick Miller 
Keywords: Anti-predator strategy, Predator sound playbacks, Multi-sensor tag, Behavioural responses, Horizontal avoidance, Baleen whale, Humpback whale
2015 (24/9)

(Article)
Rapid biotic homogenization of marine fish assemblages
Anne Magurran, Maria Dornelas, Faye Helen Moyes, Nicholas J Gotelli, Brian McGill 
2015 (19/11)

(Article)
Severity of expert-identified behavioural responses of humpback whale, minke whale, and northern bottlenose whale to naval sonar
Lise D. Sivle, Petter H. Kvadsheim, Charlotte Cure, Saana Isojunno, Paul Wensveen, Frans-Peter A. Lam, Fleur Visser, Lars Kleivane, Peter Lloyd Tyack, Catriona M Harris, Patrick Miller 
Keywords: Behavioural response, Naval sonar, Severity scoring, Humpback whale, Mega, minke whale, Balaenoptera acutorostrata, Northern bottlenose whale, Hyperoodon ampullatus, controlled exposure experiment, arctic biology
2015 (5)

(Article)
2015 (6)

(Article)
Sound exposure in harbour seals during the installation of an offshore wind farm
Gordon Drummond Hastie, Debbie JF Russell, Bernie J McConnell, Simon Moss, David Thompson, Vincent Janik 
Keywords: Wind farms, Hearing, Marine animals, Pile driving, Pinnipeds, Renewable energy, Underwater noiseNERC
2015 (10)

(Article)
The modelling and assessment of whale-watching impacts
Leslie Frances New, Ailsa Jane Hall, R. Harcourt, G. Kaufman, E.C.M. Parsons, H.C. Pearson, A.M. Cosentino, Robert Schilling Schick 
Keywords: Anthropogenic impacts, Disturbance, Management, Marine mammals, Sustainable tourism
2015 (1)

(Article)
Trends in bowhead whales in West Greenland
S.L. Rekdal, R.G. Hansen, David Louis Borchers, L. Bachmann, K.L. Laidre, O. Wiig, N.H. Nielsen, S. Fossette, O. Tervo, M.P. Heide-Jørgensen 
Keywords: Hidden Markov Models, Aerial surveys, Capture-recapture, Arctic, Genetics, Bowhead whale, Balaena mysticetus, Disko Bay, Abundance
2014 (12)

(Article)
2014 (1/6)

(Article)
2014 (12)

(Article)
Blood pressure differences associated with Optimal Macronutrient Intake Trial for Heart Health (OMNIHEART)–like diet compared with a typical American diet
John Molitor, Ian Brown, Queenie Chan, Michail Papathomas, Silvia Liverani, Nuooting Molitor, Sylvia Richardson, Linda Van Horn, Martha Daviglus, Alan Dyer, Jeremiah Stamler, Paul Elliott 
Keywords: Blood pressure, Hypertension, Nutrients, Statistics
2014 (2)

(Article)
Dose-response relationships for the onset of avoidance of sonar by free-ranging killer whales
Patrick Miller, Ricardo Nuno Antunes, Paul Wensveen, Filipa Isabel Pereira Samarra, Ana Catarina De Carvalho Alves, Peter Lloyd Tyack, Petter H. Kvadsheim, Lars Kleivane, Frans-Peter A. Lam, Michael A. Ainslie, Len Thomas 
2014

(Article)
Fin whale survival and abundance in the Gulf of St. Lawrence, Canada
Christian Ramp, J Delarue, Martine Bérubé, Philip Steven Hammond, Richard Sears 
Keywords: Fin whale, Mark-recapture, Survival, Abundance, Modeling
2014

(Conference contribution)
Inference of circadian regulatory networks
Marco Grzegorczyk, V Anne Smith, Dirk Husmeier 
Keywords: Regulatory network inference, Circadian clock, ANOVA
2014

(Article)
2014 (12)

(Article)
Long-term trends in the use of a protected area by small cetaceans in relation to changes in population status
Barbara Cheney, Ross Corkery, John Durban, Kate Grellier, Philip Steven Hammond, Valentina Islas Villanueva, Vincent Janik, Susan Lusseau, Kim Parsons, Ben Wilson, Paul Thompson 
Keywords: Abundance, Bayesian, Bottlenose dolphin, Mark-recapture, Photo-identification, Special Area of Conservation
2014 (3)

(Commissioned report)
Seal at-sea distribution, movements and behaviour
Debbie JF Russell, Bernie J McConnell 
2014

(Article)
2014

(Article)
Towards collective circum-antarctic passive acoustic monitoring
I. Van Opzeeland, F. Samaran, K.M. Stafford, K. Findlay, J. Gedamke, Danielle Harris, B.S. Miller 
2014 (27/1)

(Article)
Using short-term measures of behaviour to estimate long-term fitness of southern elephant seals.
Leslie Frances New, James Clark, Daniel Costa, Erica Fleishman, Mark Hindell, Tin Klanjšček, David Lusseau, Scott Kraus, Clive McMahon, Patrick Robinson, Robert Schilling Schick, Lisa Schwartz, Samantha Simmons, Len Thomas, Peter Lloyd Tyack, John Harwood 
Keywords: Kalman filter, Mirounga leonina, Population consequences of disturbance , State-space model, Telemetry data