Publications (PURE)

Publications

Recent publications


200  (of 865 published available) for Centre for Research into Ecological & Environmental Modelling. (source: University of St Andrews PURE)
Please click title of any item for full details.



(Article)
A balance of winners and losers in the Anthropocene
Maria Dornelas, Nicholas J. Gotelli, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran, Brian J. McGill 
Keywords: Anthropogenic, Biodiversity, Colonisation, Extinction, Population change
2019 (3)

(Review article)
A review of unmanned vehicles for the detection and monitoring of marine fauna
Ursula K. Verfuss, Ana Sofia Aniceto, Danielle Harris, Douglas Michael Gillespie, Sophie Fielding, Guillermo Jiménez, Phil Johnston, Rachael R. Sinclair, Agnar Sivertsen, Stian A. Solbø, Rune Storvold, Martin Biuw, Roy Wyatt 
Keywords: Unmanned vehicles, Marine animal monitoring, Underwater sound, Environmental impact assessment, Offshore industry
2019 (30/1)

(Review article)
Advances in research on the impacts of anti-submarine sonar on beaked whales
Y. Bernaldo De Quirós, A. Fernandez, R. W. Baird, R. L. Brownell, Natacha Aguilar de Soto, D. Allen, M. Arbelo, M. Arregui, A. Costidis, A. Fahlman, A. Frantzis, F. Gulland, M. Iñíguez, Mark Johnson, A. Komnenou, H. Koopman, D. A. Pabst, W. D. Roe, E. Sierra, M. Tejedor, G. Schorr 
Keywords: Beaked whales, Decompression sickness, Naval exercises, Sonar, StrandingBiochemistry, Genetics and Molecular Biology(all), Immunology and Microbiology(all), Environmental Science(all), Agricultural and Biological Sciences(all)
2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (30/1)

(Article)
Changes in stable isotope compositions during fasting in phocid seals
sarah habran, France Damseaux, Patrick Pomeroy, Cathy Debier, Dan Crocker, Gilles Lepoint, Krishna Das 
Keywords: Stable isotopes, Seal, Lactation, Post-weaning fast, ReproductionNERC


(Article)
Decline in abundance and apparent survival rates of fin whales (Balaenoptera physalus) in the northern Gulf of St. Lawrence
Christian Ramp, Julien Delarue, Alain Carpentier, Martine Bérubé, Per J. Palsbøl, Richard Sears, Philip Steven Hammond 
Keywords: Abundance, Capture heterogeneity, Capture-recapture, Fin whale, Site fidelity, Survival rate, Terminal bias
2019 (21/1)

(Commissioned report)
EIRPHOT : A critical assessment of Wales’ grey seal ( Halichoerus grypus ) photo - identification database .
Izzy Langley, Tom Stringell, Ceri Morris, Lex Hiby, Patrick Pomeroy 
Keywords: NERC
2019 (3)

(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves
2019 (1)

(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC
2019 (9/1)

(Article)
Modelling reassurances of clinicians with Hidden Markov models
Valentin Mina Popov, Alesha Bradley, Gerald Michael Humphris 
Keywords: Reassurance, Hidden Markov models, Fixed effects


(Article)
Non-stationary Gaussian models with physical barriers
Haakon Bakka, Jarno Vanhatalo, Janine Baerbel Illian, Daniel Simpson, Haavard Rue 
Keywords: Archipelago, Barriers, Coastline problem, INLA, Spatial statistics, Stochastic partial differential equations


(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica


(Article)
Understanding species distribution in dynamic populations
Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen Votier, Janine Baerbel Illian 
Keywords: Point process models, Spatio-temporal log-Gaussian Cox process, Species distribution modelEcology, Evolution, Behavior and Systematics
2019 (1)

(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops


(Article)
inlabru
Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian 
Keywords: Spatial modeling, Point process, Spatial count, Georeferenced data, Bayesian inference


(Article)
2018 (5)

(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (8)

(Commissioned report)


(Article)
Assessing cetacean surveys throughout the Mediterranean Sea
Laura Mannocci, Jason J. Roberts, Patrick N. Halpin, Matthieu Authier, Oliver Boisseau, Mohamed Nejmeddine Bradai, Ana Cañadas, Carla Chicote, Léa David, Nathalie Di-Méglio, Caterina M. Fortuna, Alexandros Frantzis, Manel Gazo, Philip Steven Hammond, DraÅ¡ko Holcer, Kristin Kaschner, Dani Kerem, Giancarlo Lauriano, Tim Lewis, Giuseppe Notarbartolo di Sciara, Simone Panigada, Juan Antonio Raga, Aviad Scheinin, Vincent Ridoux, Adriana Vella, Joseph Vella 
2018 (10)

(Article)
Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions
Ida Carlén, Len Thomas, Julia Carlström, Mats Amundin, Jonas Teilmann, Nick Tregenza, Jakob Tougaard, Jens C. Koblitz, Signe Sveegaard, Daniel Wennerberg, Olli Loisa, Michael Dähne, Katharina Brundiers, Monika Kosecka, Line Anker Kyhn, Cinthia Tiberi Ljungqvist, Iwona Pawliczka, Radomil Koza, Bartlomiej Arciszewski, Anders Galatius, Martin Jabbusch, Jussi Laaksonlaita, Jussi Niemi, Sami Lyytinen, Anja Gallus, Harald Benke, Penina Blankett, Krzysztof E. Skóra, Alejandro Acevedo-Gutiérrez 
Keywords: Spatial distribution, Passive acoustic monitoring, Population structure, Harbour porpoise, Marine protected areas, Biodiversity conservation
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (12/7)

(Article)
Body density of humpback whales (Megaptera novaengliae) in feeding aggregations estimated from hydrodynamic gliding performance
Tomoko Narazaki, Saana Isojunno, Douglas P. Nowacek, Ari S. Friedlaender, Christian Ramp, Sophie Caroline Smout, Kagari Aoki, Volker Bernt Deecke, Katsufumi Sato, Patrick Miller 
2018 (2)

(Article)
Cetacean rapid assessment: an approach to fill knowledge gaps and target conservation across large data deficient areas
Gillian Tracey Braulik, Magreth Kasuga, Anja Wittich, Jeremy J Kiszka, Jamie Donald John MacAulay, Douglas Michael Gillespie, Jonathan Charles David Gordon, Said Shaib Said, Philip Steven Hammond 
Keywords: Cetaceans, Distribution, Environmental impact assessement, Management, Marine spatial planning, Rapid assessment, Tanzania
2018 (1)

(Review article)
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys
Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas 
Keywords: Marine mammals, Monitoring methods, Underwater noise, Seismic survey, Detection performance, Low visibility
2018 (22/5)

(Comment/debate)
Corrigendum:
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Oceanography, Environmental Chemistry, Environmental Science(all), Earth and Planetary Sciences (miscellaneous)


(Article)
2018 (20/2)

(Article)
Divergent biodiversity change within ecosystems
Anne Magurran, Amy Elizabeth Deacon, Faye Helen Moyes, Hideyasu Shimadzu, Maria Dornelas, Dawn Phillip, Indar Ramnarine 
Keywords: Biodiversity change, Tropical ecology, Freshwater, Temporal turnover, Community-level regulation
2018 (12)

(Article)
Estimating effective detection area of static passive acoustic data loggers from playback experiments with cetacean vocalisations
Hanna K. Nuuttila, Katharina Brundiers, Michael Dähne, Jens C. Koblitz, Len Thomas, Winnie Courtene-Jones, Peter G. H. Evans, John R. Turner, Jim D. Bennell, Jan G. Hiddink 
Keywords: Abundance, C-POD, Density estimation, Detection function, Effective detection radius, Static passive acoustic monitoring
2018 (27/3)

(Other report)
2018 (18/7)

(Review article)
2018

(Entry for encyclopedia/dictionary)
Gray Seal, Halichoerus grypus
Ailsa Jane Hall, Debbie JF Russell 
2018 (3)

(Article)
Harbour seals avoid tidal turbine noise
Gordon Drummond Hastie, Debbie JF Russell, Paul Lepper, Jim Elliott, Ben Wilson, Steven Benjamins, David Thompson 
Keywords: Collision risk, Marine mammals, Avoidance, Renewable energy, Pinnipeds, Marine spatial planning, Underwater noise, Tidal turbines, Behavioural responsesNERC
2018 (4)

(Article)


(Article)
How to fit the distribution of apex scavengers into land‐abandonment scenarios? The Cinereous vulture in the Mediterranean biome
Isabel García‐Barón, Ainara Cortés‐Avizanda, Peter H. Verburg, Tiago A. Marques, Rubén Moreno‐Opo, Henrique M. Pereira, José A. Donázar, Lluís Brotons 
Keywords: Aegypius monachus, Socio-economies, European Union, Farmland, Land abandonment, Ecological rewilding


(Article)
Identifying prognostic structural features in tissue sections of colon cancer patients using point pattern analysis
Peter David Caie, Janine Baerbel Illian, Ben C. Stevenson, Anne Savage, David James Harrison, James L. Brown 
Keywords: Colorectal cancer, Palm intensity function, Spatial point patterns
2018 (12)

(Article)
Level set Cox processes
Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian 
Keywords: Point process, Cox process, Level set inversion, Classification, Gaussian fields
2018 (1)

(Commissioned report)
Man-made structures and Apex Predators: Spatial interactions and overlap (MAPS)
James Grecian, Elizabeth A Masden, Philip Steven Hammond, Ellie Owen, Francis Daunt, Sarah Wanless, Debbie JF Russell 
Keywords: NERC
2018 (1)

(Review article)
Marine mammals and sonar
Catriona M Harris, Len Thomas, Erin Falcone, John Hildebrand, Dorian Houser, Petter Kvadsheim, Frans-Peter A. Lam, Patrick Miller, David J. Moretti, Andrew Read, Hans Slabbekoorn, Brandon L. Southall, Peter Lloyd Tyack, Douglas Wartzok, Vincent Janik 
Keywords: Sonar, Cetaceans, Human disturbance, Impact assessment, Anti-predator response, Anthropogenic noise, Behavioural response, Marine mammals, Dose response
2018 (2)

(Article)
Modelling the broadband propagation of marine mammal echolocation clicks for click-based population density estimates
Alexander von Benda-Beckmann, Len Thomas, Peter Lloyd Tyack, Michael Ainslie 
2018 (25/7)

(Article)
2018 (1)

(Article)
2018 (12)

(Article)
2018 (8/1)

(Article)
Primary education in Vietnam and pupil online engagement
Quynh Nguyen, Raouf Naguib, Ashish Das, Michail Papathomas, Edgar Vallar, Nilmini Wickramasinghe, Gil Nonato Santos, Maria Cecilia Galvez, Viet Nguyen 
Keywords: Pedagogy, Computer Science, Internet, Urban and rural schools, North Vietnam
2018 (4)

(Article)
Seal carrion is a predictable resource for coastal ecosystems
Maria-Martina Quaggiotto, Philip S. Barton, Chris Morris, Simon E. W. Moss, Patrick Pomeroy, Dominic J. McCafferty,  
Keywords: Predictability, Resource subsidy, Coastal, Carcass, Pinniped, Relative standard error, ScavengerNERC
2018 (12)

(Article)
Simulating shifts in taxonomic and functional β-diversity of ray-finned fishes
Anderson Aires Eduardo, Faye Helen Moyes, Pablo Ariel Martinez, Anne Magurran, Sidney F. Gouveia 
Keywords: Actinopterygii, Biodiversity loss, Functional diversity, Nestedness, Turnover
2018 (14/2)

(Article)
Sociability between invasive guppies and native topminnows
Alfredo Fernandez Ojanguren, Omar Domínguez-Domínguez, Anne Magurran 


(Review article)
Spatial modeling with R-INLA
Haakon Bakka, HÃ¥vard Rue, Geir-arne Fuglstad, Andrea Riebler, David Bolin, Janine Baerbel Illian, Elias Krainski, Daniel Simpson, Finn Lindgren 
Keywords: Approximate Bayesian inference, Gaussian Markov random fields, Laplace approximations, Sparse matrices, Stochastic partial differential equations
2018 (1/8)

(Article)
Spline-based nonparametric inference in general state-switching models
Roland Langrock, Timo Adam, Vianey Leos-Barajas, Sina Mews, David Lawrence Miller, Yannis Papastamatiou 
Keywords: Hidden Markov model, Maximum penalized likelihood, Markov-switching regression, Penalized splines
2018 (2)

(Article)
The challenge of habitat modelling for threatened low density species using heterogeneous data
Ana Maria Canadas, Natacha Aguilar de Soto, M. Aissi, A. Arcangeli, M. Azzolin, A. B-Nagy, G Bearzi, I. Campana, C. Chicote, Cedric Cotte, R. Crosti, L David, A. Di Natale, A. Frantzis, P. Garcia, M. Gazo, R. Gutierrez-Xarxa, D. Holcer, S. Laran, G. Lauriano, T Lewis, A. Moulins, B. Mussi, G. Notarbartolo di Sciara, Simone Panigada, X. Pastor, E. Politi, M. Pulcini, J.A. Raga, Luke Edward Rendell, M. Rosso, P. Tepsich, J. Tomás, M. Tringali, Th. Roger 
Keywords: Cuvier’s beaked whales, Abundance, Distribution, Conservation, Density surface modelling, Correction factor, Mediterranean sea
2018 (12/6)

(Article)
Turbulent flow reduces oxygen consumption in the labriform swimming shiner perch, Cymatogaster aggregata
Julie M. van der Hoop, Margaret L. Byron, Karlina Ozolina, David Lawrence Miller, Jacob L. Johansen, Paolo Domenici, John F. Steffensen 
Keywords: Vortex, Eddy, Gait, Swimming kinematics, Metabolism, Space use
2018 (31/12)

(Article)


(Review article)
Understanding the population consequences of disturbance
Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood 
Keywords: Anthropogenic disturbance, Environmental impact assessments, Marine mammals, Nonconsumptive effects, Population consequences, Trait-mediated indirect interactions, Uncertainty
2018 (11/6)

(Paper)
Validating Synthetic Longitudinal Populations for evaluation of Population Data Linkage
Tom Dalton, Graham Njal Cameron Kirby, Alan Dearle, Ozgur Akgun, Monique Lea MacKenzie 
2017 (4)

(Article)
A simulation approach to assessing environmental risk of sound exposure to marine mammals
Carl Robert Donovan, Catriona M Harris, Lorenzo Milazzo, John Harwood, Laura Helen Marshall,  
Keywords: Agent-based models, Grey seal, Harbour porpoise, Risk assessment, Underwater sound
2017 (14/8)

(Article)
Addressing uncertainty in marine resource management; combining community engagement and tracking technology to characterize human behavior
Kristian Metcalfe, Tim Collins, Kirsten E. Abernethy, Richard Boumba, Jean-Claude Dengui, Ricky Miyalou, Richard J. Parnell, Kate E. Plummer, Debbie JF Russell, Gilbert Koumba Safou, Dominic Tilley, Rachel A. Turner, Hilde Vanleeuwe, Matthew J. Witt, Brendan J. Godley 
Keywords: Africa, Artisanal fisheries, Behaviour, Fisheries management, Marine spatial planning, Participatory data collection, Resource use, Small-scale fisheries
2017 (1)

(Article)
An analysis of pilot whale vocalization activity using hidden Markov models
Valentin Mina Popov, Roland Langrock, Stacy Lynn De Ruiter, Fleur Visser 
2017 (9)

(Article)
2017 (23/1)

(Article)
An experiment of the impact of a neonicotinoid pesticide on honeybees
Robert Schilling Schick, Jeremy John Greenwood, Stephen Terrence Buckland 
Keywords: Thiamethoxam, Honeybee, Field experiment, Neonicotinoids, Critical review
2017 (10/8)

(Article)
Animal Counting Toolkit
Katie Gaut, Rowenna Gryba, Jeffrey Moore, Eric Rexstad, Doug Sandilands, Justin Steventon, Randall Reeves 
Keywords: Abundance, Boat, Bycatch, Capacity, Conservation, Dolphin
2017 (5/5)

(Commissioned report)
2017

(Commissioned report)
Approaches to Understanding the Cumulative Effects of Stressors on Marine Mammals
Peter Lloyd Tyack, Helen Bailey, Daniel Crocker, James E Estes, Clinton D Francis, John Harwood, Lori Schwacke, Len Thomas, Douglas Wartzok 
2017 (31/1)

(Article)
Assigning stranded bottlenose dolphins to source stocks using stable isotope ratios following the Deepwater Horizon oil spill
A A Hohn, Len Thomas, R. H. Carmichael, J. Litz, C. Clemons-Chevis, S. F. Shippee, C. Sinclair, S. Smith, T. R. Speakman, M. C. Tumlin, E. S. Zolman 
Keywords: Carbon, Gulf of Mexico, Nitrogen, Stock structure, Sulfur, Tursiops truncatusEcology, Nature and Landscape Conservation
2017 (3)

(Review article)
Bayesian computing with INLA
Haavard Rue, Andrea Riebler, Sigrunn H. Sørbye, Janine Baerbel Illian, Daniel P. Simpson, Finn K. Lindgren 
Keywords: Gaussian Markov random field, Laplace approximations, Approximate Bayesian inference, Latest Gaussian models, Numerical integration, Sparse matrices
2017 (3/1)

(Article)
Best practices for virtual participation in meetings
Stephanie E. Hampton, Benjamin S. Halpern, Marten Winter, Jennifer K. Balch, John N. Parker, Jill S. Baron, Margaret Palmer, Mark P. Schildhauer, Pamela Bishop, Thomas Robert Meagher, Alison Specht 
2017 (26/7)

(Article)
Community-level regulation of temporal trends in biodiversity
Nicholas Gotelli, Hideyasu Shimadzu, Maria Dornelas, Brian McGill, Faye Helen Moyes, Anne Magurran 
2017 (6)

(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (16/8)

(Article)
Determining the behavioural dose-response relationship of marine mammals to air gun noise and source proximity
Rebecca A. Dunlop, Michael J. Noad, Robert D. McCauley, Lindesay Alexandra Sarah Scott-Hayward, Eric Kniest, Robert Slade, David Paton, Douglas H. Cato 
Keywords: Anthropogenic noise, Behavioural response study, Received level, Humpback whale, Seismic air gun
2017 (15/6)

(Article)
2017 (11)

(Article)
Distance sampling with camera traps
Stephen Terrence Buckland, Marie-Lyne Despres-Einspenner, Hjalmar Kuhn 
Keywords: Animal abundance, Camera trapping, Density, Distance sampling, Maxwell's duiker
2017 (7)

(Article)
Distribution, abundance and habitat use of deep diving cetaceans in the North-East Atlantic
Emer Rogan, Ana Cañadas, Kelly Macleod, M. Begoña Santos, Bjarni Mikkelsen, Ainhize Uriarte, Olivier Van Canneyt, José Antonio Vázquez, Philip Steven Hammond 
Keywords: Design-based abundance, Model-based abundance, Beaked whales, Sperm whales, Pilot whales, Distribution, Deep divers, Habitat models
2017 (5)

(Article)
2017 (2)

(Article)
Estimates of local biodiversity change over time stand up to scrutiny
Mark Vellend, Maria Dornelas, Lander Baeten, Robin Beauséjour, Carissa D. Brown, Pieter De Frenne, Sarah C. Elmendorf, Nicholas J Gotelli, Faye Helen Moyes, Isla H. Myers-Smith, Anne Magurran, Brian J. McGill, Hideyasu Shimadzu,  
Keywords: Biodiversity, Meta-analysis, Species richness, Temporal change
2017 (7)

(Article)
Estimating cetacean density and abundance in the Central and Western Mediterranean Sea through aerial surveys
Simone Panigada, Giancarlo Lauriano, Greg Donovan, Nino Pierantonio, Ana Cañadas, José Antonio Vázquez, M Louise Burt 
2017 (7)

(Article)
Evaluating detectability of freshwater fish assemblages in tropical streams
Amy Elizabeth Deacon, Rajindra Mahabir, Devan Inderlall, Indar W. Ramnarine, Anne Magurran 
Keywords: Trinidad, Electrofishing, Alpha diversity, Detectability, Species richness, Sampling methods, Gear bias
2017 (12/10)

(Letter)
Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated
Barbara L Taylor, Lorenzo Rojas-Bracho, Jeffrey Moore, Armando Jaramillo-Legorreta, Jay M Ver Hoef, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Jay Barlow, Tim Gerrodette, Nicholas Tregenza, Len Thomas, Philip Steven Hammond 
Keywords: Extinction, Illegal fishing, Line transect, Phocoena sinus, Totoaba macdonaldi, Vaquita abundance , Passive acoustic monitoring , C-POD
2017

(Chapter)
Extinction risk and threats to plants
Eimear Nic Lughadha, Catia Canteiro, Steven Bachman, David Baines, Lauren Gardiner, Thomas Robert Meagher, Malin Rivers, Andre Shuiteman, Emma Williams, Serene Hargreaves 
2017 (1/6)

(Article)
2017

(Commissioned report)
FIS013 – Scoping the background information for an ecosystem approach to fisheries in Scottish waters
Michael R. Heath, Law Richard, Searle Kate, Robin Cook, Dougie Speirs, Francis Daunt, Sarah Wanless, Kieran Hyder, John K. Pinnegar, Robert Thorpe, Diele Karen, Neil Campbell, Peter Wright, James Thorburn, Robert Arthur, Paul Macdonald, Beth Mouat, Clive Fox, Sheila Heymans, Ken Coull, Peter Evans, Paul Fernandes, Philip Steven Hammond, Sophie Caroline Smout, Jeppe Kolding, David Reid 
Keywords: fisheries economics , Fisheries management
2017 (14/9)

(Article)
Fine-scale harbour seal usage for informed marine spatial planning
Esther Lane Jones, Carol Elizabeth Sparling, Bernie J McConnell, Chris Morris, Sophie Caroline Smout 
2017 (28/4)

(Article)
Global warming and ocean stratification
Manoj Joshi, Roland von Glasow, Robin S. Smith, Charles G. M. Paxton, Amanda C. Maycock, Daniel J. Lunt, Claire Loptson, Paul Markwick 
Keywords: Climate dynamics, Asteroid impact, Meteor impact, Radiative forcing, K-Pg boundary, NeoproterozoicAtmospheric Science
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (7/6)

(Article)
Impact of wild prey availability on livestock predation by snow leopards
Kulbhushansingh R. Suryawanshi, Stephen M. Redpath, Yash Veer Bhatnagar, Uma Ramakrishnan, Vaibhav Chaturvedi, Sophie Caroline Smout, Charudutt Mishra 
Keywords: Apparent competition, Apparent facilitation, Conservation conflicts, Indirect interactions, Predator, Prey interactions, Snow leopardGeneral
2017 (10)

(Article)


(Article)
Incorporating animal movement into distance sampling
Richard Glennie, Stephen Terrence Buckland, Roland Langrock, Tim Gerrodette, Lisa Ballance, Susan Chivers, Michael Scott, William Perrin 
Keywords: Abundance, Distance sampling, Animal movement
2017 (4)

(Article)
Individual size, sex and rearing environment impact on aggression in newly weaned seals
Kelly Joanne Robinson, Patrick Pomeroy, Neil Hazon, Simon Moss, Sean Twiss 
Keywords: NERC
2017 (12)

(Article)
Individual, ecological, and anthropogenic influences on activity budgets of long-finned pilot whales
Saana Isojunno, Dinara Sadykova, Stacy Lynn De Ruiter, Charlotte Curé, Fleur Visser, Len Thomas, Patrick Miller, Catriona M Harris 
Keywords: Anthropogenic noise, Activity synchrony, Benthic habitat, Deep diving mammal, DTAG, Ethogram, Globicephala melas, Hidden Markov model, Naval sonar
2017 (12)

(Article)


(Article)
Intrinsic and extrinsic factors drive ontogeny of early-life at-sea behaviour in a marine top predator
Matthew Ian Daniel Carter, Debbie JF Russell, Clinton John Blight, David Thompson, Philip J. Hosegood,  
Keywords: NERC
2017 (11)

(Article)
Last call: Passive acoustic monitoring shows continued rapid decline of critically endangered vaquita
Len Thomas, Armando Jaramillo-legorreta, Gustavo Cardenas-hinojosa, Edwyna Nieto-garcia, Lorenzo Rojas-bracho, Jay M. Ver Hoef, Jeffrey Moore, Barbara Taylor, Jay Barlow, Nicholas Tregenza 
2017 (7/2)

(Article)
Late summer distribution and abundance of ice-associated whales in the Norwegian High Arctic
Jade Vacquié-Garcia, Christian Lydersen, Tiago A. Marques, Jon Aars, Heidi Ahonen, Mette Skern-Mauritzen, Nils Oien, Kit M Kovacs 
Keywords: Abundance, Arctic, Belugas, Bowhead whales, Climate change, Distribution, Narwhals, Svalbard, White whales
2017

(Conference contribution)
2017 (8/3)

(Article)
Low tortoise abundances in pine forest plantations in forest-shrubland transition areas
Roberto C. Rodríguez-Caro, Cornelia Sabrina Oedekoven, Eva Graciá, José D. Anadón, Stephen Terrence Buckland, Miguel A. Esteve-Selma, Julia Martinez, Andrés Giménez 
2017 (14/7)

(Article)
MapMySmoke
Robert Schilling Schick, Tom Kelsey, John Marston, Kay Sampson, Gerald Michael Humphris 
Keywords: Smoking cessation, Smartphone, App, Hidden Markov models, Geospatial, INLA
2017 (10)

(Article)
2017 (16/1)

(Article)
2017 (7)

(Letter)
Model-based approaches to deal with detectability
Tiago A. Marques, Len Thomas, Marc Kery, Stephen Terrence Buckland, David Louis Borchers, Eric Rexstad, Rachel M. Fewster, Darryl I. Mackenzie, J. Andrew Royle, Gurutzeta Guillera-Arroita, Colleen M. Handel, David C. Pavlacky, Richard Joseph Camp 
Keywords: Relative-abundance, Distance, Occupancy
2017 (11/10)

(Commissioned report)
Modelling harbour seal movements
Bernie J McConnell, Sophie Caroline Smout, Mick Wu 
Keywords: Individual based model , Seals, TelemetryScottish Government


(Article)
Open population maximum likelihood spatial capture-recapture
Richard Glennie, David Louis Borchers, Matthew Murchie, Bart Harmsen, Rebecca Foster 
Keywords: Abundance, Survival, Spatial capture-recapture, Open population models
2017 (2)

(Article)
Passive acoustic monitoring of the decline of Mexico's critically endangered vaquita
Armando Jaramillo-Legorreta, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Lorenzo Rojas-Bracho, Jay Ver Hoef, Jeffrey Moore, Nicholas Tregenza, Jay Barlow, Tim Gerrodette, Len Thomas, Barbara Taylor 
Keywords: Extinction, Phocoena sinus, Population decline, Statistical modeling
2017 (5/6)

(Article)
Plankton
Andrew Stuart Brierley 


(Article)
2017 (12)

(Article)
Point process models for spatio-temporal distance sampling data from a large-scale survey of blue whales
Joyce Yuan , F. E. Bachl, F. Lindgren, David Louis Borchers, Janine Baerbel Illian, Stephen Terrence Buckland, H Rue, T. Gerrodette 
2017 (10)

(Article)
2017 (31/1)

(Article)
2017 (27/10)

(Other contribution)
Quantifying the Power to Detect Change: methodological development and implementation using the R package MRSeaPower.
Monique Lea MacKenzie, Lindesay Alexandra Sarah Scott-Hayward, Charles G. M. Paxton, M Louise Burt 
2017 (23/11)

(Article)
Rapid changes in Atlantic grey seal milk from birth to weaning – immune factors and indicators of metabolic strain
Amanda D. Lowe, Sami Bawazeer, David G. Watson, Suzanne McGill, Richard J.S. Burchmore, Patrick Pomeroy, Malcolm W. Kennedy 
Keywords: NERC
2017 (6)

(Article)
Rebuilding beluga stocks in West Greenland
M. P. Heide-Jørgensen, R. G. Hansen, S. Fossette, N. H. Nielsen, David Louis Borchers, H. Stern, L. Witting 
Keywords: Aerial survey, Bayesian assessment, Hidden Markov model, Line transect, Beluga, Sea ice cover, Abundance estimates, Cetaceans
2017 (1/11)

(Chapter)
Reproductive behaviour
Patrick Pomeroy, Sean Twiss, Kelly Joanne Robinson 
Keywords: NERC
2017 (2/2)

(Commissioned report)
Review of analytical approaches for identifying usage and foraging areas at sea for harbour seals
Esther Lane Jones, Sophie Caroline Smout, Debbie JF Russell, Eunice Pinn, Bernie J McConnell 
Keywords: JNCC
2017 (12)

(Article)
Seals and shipping
Esther Lane Jones, Gordon Drummond Hastie, Sophie Caroline Smout, Joseph Onoufriou, Nathan Merchant, Kate Brookes, David Thompson 
Keywords: Halichoerus grypus, Phoca vitulina, Spatial overlap, AIS, Telemetry, Acoustic propagation, Marine stressor, MSFD, Noise pollution, UncertaintyNERC
2017 (15/1)

(Article)
Shipping noise in a dynamic sea
F. Chen, G. I. Shapiro, K. A. Bennett, S. N. Ingram, David Thompson, C. Vincent, Debbie JF Russell, C. B. Embling 
Keywords: Anthropogenic noise, Marine animals, Sound propagation, Acoustic modelling, Ocean frontsNERC


(Article)
Spatial distribution of citizen science casuistic observations for different taxonomic groups
Patrícia Tiago, Ana Ceia-Hasse, Tiago A. Marques, César Capinha, Henrique M. Pereira 
2017 (3)

(Article)
Spatio-temporal variation in click production rates of beaked whales
Victoria E. Warren, Tiago A. Marques, Danielle Harris, Len Thomas, Peter Lloyd Tyack, Natacha Aguilar de Soto, Mark Johnson 
Keywords: Arts and Humanities (miscellaneous), Acoustics and Ultrasonics
2017 (10/7)

(Article)
Sperm whale (Physeter macrocephalus) collision with a research vessel
Gregory L. Fulling, Thomas A. Jefferson, Dagmar Fertl, Juan Carlos Salinas Vega, Cornelia Sabrina Oedekoven, Stan A. Kuczaj II 
2017 (31/1)

(Article)
Survival, density, and abundance of common bottlenose dolphins in Barataria Bay (USA) following the Deepwater Horizon oil spill
Trent L. McDonald, Fawn E. Hornsby, Todd R. Speakman, Eric S. Zolman, Keith D. Mullin, Carrie Sinclair, Patricia E. Rosel, Len Thomas, Lori H. Schwacke 
Keywords: Capture-recapture, Photo-identification, Robust design, Spatial-capture model, Tursiops truncatusEcology, Nature and Landscape Conservation
2017 (8)

(Article)
Synthesis centers as critical research infrastructure
Jill Baron, Alison Specht, Eric Garnier, Pamela Bishop, Andrew Campbell, Frank Davis, Bruno Fady, Dawn Field, Louis Gross, Siddeswara Guru, Benjamin Halpern, Stephanie Hampton, Peter Leavitt, Thomas Robert Meagher, Jean Ometto, John Parker, Richard Price, Casey Rawson, Allen Rodrigo, Laura Sheble, Marten Winter 
Keywords: Synthesis, Collaboration, Interdisciplinary research
2017 (7/3)

(Comment/debate)


(Article)
The number and distribution of polar bears in the western Barents Sea
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Ursus maritimus, Distance sampling, Sea ice, Habitat loss, Svalbard, Helicopter
2017 (7/3)

(Article)
True’s beaked whale (Mesoplodon mirus) in Macaronesia
Natacha Aguilar de Soto, Vidal Martin, Monica Silva, Roland Edler, Cristel Reyes, Manuel Carrillo, Agustina Schiavi, Talia Morales, Belen García-Ovide, Anna Sanchez-Mora, Nerea Garcia-Tavero, Lisa Steiner, Michael Scheer, Roland Gockel, Dylan Walker, Enrico Villa, Petra Szlama, Ida K. Eriksson, Marisa Tejedor, Monica Perez-Gil, João Quaresma, Wojtek Bachara, Emma Louise Carroll 
Keywords: Ziphiidae, Cytochrome b, mtDNA, Genetics, Colouration patterns, Phenotype, North Atlantic, Cetacean distribution, Canary Islands, Azores
2017 (25/4)

(Article)
Underwater ambient noise in a baleen whale migratory habitat off the Azores
Miriam Romagosa, Irma Cascão, Nathan D. Merchant, Marc O. Lammers, Eva Giacomello, Tiago A. Marques, Mónica A. Silva 
Keywords: Underwater noise, Ship noise, Baleen whale, MSFD, Open ocean environment
2017 (21/12)

(Commissioned report)
2017

(Commissioned report)
2017 (12)

(Article)
Vocal foragers and silent crowds
Fleur Visser, Annebelle C.M. Kok, Machiel G. Oudejans, Lindesay Alexandra Sarah Scott-Hayward, Stacy Lynn De Ruiter, Ana Catarina De Carvalho Alves, Ricardo Nuno Antunes, Saana Isojunno, Graham J. Pierce, Hans Slabbekoorn, Jef Huisman, Patrick Miller 
Keywords: Acoustic tags, Animal communication, Call, Foraging, Pilot whale, Social behaviourEcology, Evolution, Behavior and Systematics, Animal Science and Zoology
2017 (27/12)

(Article)
Whale distribution in a breeding area
Daniel Danilewicz, Philip Steven Hammond, Len Thomas, Alexandre N Zerbini 
Keywords: Shelter, Conservation, Density surface model, Cetacean, Line transect, Reproduction
2017 (14/7)

(Book)
Whales
Philip Steven Hammond, Sonja Heinrich, Sascha Kate Hooker, Peter Lloyd Tyack 
2016 (5)

(Editorial)
50-Year Anniversary of Papers by Cormack, Jolly and Seber
Stephen Terrence Buckland, Byron J T Morgan 
2016 (5)

(Article)
A conversation with Richard M. Cormack
Stephen Terrence Buckland 
2016 (21/3)

(Article)
Abundance and distribution of sperm whales in the Canary Islands
Andrea Fais, Tim P. Lewis, Daniel P. Zitterbart, Omar Álvarez, Ana Tejedor, Natacha Aguilar de Soto 
2016 (8)

(Commissioned report)
2016 (12)

(Article)
Aerial low frequency hearing in captive and free-ranging harbour seals (Phoca vitulina) using auditory brainstem responses
Klaus Lucke, Gordon Drummond Hastie, Kerstin Ternes, Bernie J McConnell, Simon Moss, Debbie JF Russell, Heike Weber, Vincent Janik 
Keywords: Harbour seal , Phoca vitulina, Hearing, ABR, Low-frequencyNERC
2016 (28/12)

(Article)
An assessment of the population of cotton-top tamarins (Saguinus oedipus) and their habitat in Colombia
Anne Savage, Len Thomas, Katie L. Feilen, Luis H. Soto, Mackenzie Pearson, Felix S. Medina, German Emeris, Rosamira R. Guillen 
Keywords: Medicine(all), Biochemistry, Genetics and Molecular Biology(all), Agricultural and Biological Sciences(all)
2016 (19/5)

(Article)
An efficient acoustic density estimation method with human detectors applied to gibbons in Cambodia
Benjamin M. Rawson, David Louis Borchers, Ben Stevenson, Tiago A. Marques, Len Thomas 
2016 (1/6)

(Commissioned report)
2016 (12)

(Article)
Avoidance of wind farms by harbour seals is limited to pile driving activities
Debbie JF Russell, Gordon Drummond Hastie, David Thompson, Vincent Janik, Philip Steven Hammond, Lindesay Alexandra Sarah Scott-Hayward, Jason Matthiopoulos, Esther Lane Jones, Bernie J McConnell 
Keywords: Complex Region Spatial Smoother, Disturbance, Marine renewables, Marine spatial planning, Pinnipeds, Renewable energy, Spatially Adaptive Local Smoothing Algorithm, Spatially adaptive smoothing , Underwater noiseNERC, BEIS/DECC, Scottish Government
2016

(Chapter)
2016 (17/8)

(Article)
2016 (5)

(Article)
Cannibalism by a male grey seal (Halichoerus grypus) in the North Sea
Amanda Bishop, Patrick Pomeroy, Sean Twiss 
Keywords: NERC
2016 (9)

(Article)